Variant report

Variant	rs28601677
Chromosome Location	chr4:96892650-96892651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10000218	1.00[AMR][1000 genomes]
rs10452139	1.00[AMR][1000 genomes]
rs10452169	1.00[AMR][1000 genomes]
rs10452170	1.00[AMR][1000 genomes]
rs10452171	1.00[AMR][1000 genomes]
rs10452172	1.00[AMR][1000 genomes]
rs10516984	1.00[AMR][1000 genomes]
rs28412255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539992	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840262	1.00[AMR][1000 genomes]
rs73840268	1.00[AMR][1000 genomes]
rs73840289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96885800-96894400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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