Variant report

Variant	rs73840268
Chromosome Location	chr4:96870199-96870200
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10000218	1.00[AMR][1000 genomes]
rs10452139	1.00[AMR][1000 genomes]
rs10452169	1.00[AMR][1000 genomes]
rs10452170	1.00[AMR][1000 genomes]
rs10452171	1.00[AMR][1000 genomes]
rs10452172	1.00[AMR][1000 genomes]
rs10516984	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28412255	1.00[AMR][1000 genomes]
rs28432220	1.00[AMR][1000 genomes]
rs28539992	1.00[AMR][1000 genomes]
rs28601677	1.00[AMR][1000 genomes]
rs55669469	0.84[AFR][1000 genomes]
rs6849094	0.97[AFR][1000 genomes]
rs73840262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73840289	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3438975	chr4:96843823-96871545	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96867200-96877000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:96869400-96871400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:96870000-96870400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:96870000-96871200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links