Variant report

Variant	rs10452962
Chromosome Location	chr7:108216100-108216101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108214879..108218601-chr7:108220209..108223552,3	MCF-7	breast:
2	chr7:108215196..108217245-chr7:108232389..108235110,2	K562	blood:
3	chr7:108163122..108173185-chr7:108207236..108216619,40	K562	blood:
4	chr7:108213141..108217464-chr7:108225107..108230596,8	K562	blood:
5	chr7:108163136..108166047-chr7:108214620..108217426,3	K562	blood:
6	chr7:108162967..108170259-chr7:108208242..108216228,25	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17155959	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2240450	1.00[MEX][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs55657836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55687634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57046095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58052113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598865	0.81[AFR][1000 genomes]
rs60883136	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713149	0.81[AFR][1000 genomes]
rs73713153	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73713157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713164	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108211200-108219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:108211200-108219600	Weak transcription	Lung	lung
3	chr7:108211400-108216600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:108211400-108217400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:108211400-108219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:108211400-108219600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:108211400-108219600	Weak transcription	Colonic Mucosa	Colon
8	chr7:108211400-108219600	Weak transcription	Esophagus	oesophagus
9	chr7:108211400-108219600	Weak transcription	Ovary	ovary
10	chr7:108211400-108219800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:108211600-108219200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:108211600-108219200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:108211600-108219400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:108211600-108219400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:108211600-108220000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:108211800-108218400	Weak transcription	NHLF	lung
17	chr7:108211800-108219800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:108212000-108219400	Weak transcription	Brain Germinal Matrix	brain
19	chr7:108212000-108219600	Weak transcription	Fetal Stomach	stomach
20	chr7:108212000-108222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:108212200-108219400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:108212200-108219600	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:108212200-108219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:108212400-108216400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:108212400-108216400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:108212400-108216600	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:108212400-108217200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:108212400-108219200	Weak transcription	Fetal Brain Female	brain
29	chr7:108212400-108219400	Weak transcription	Aorta	Aorta
30	chr7:108212400-108219400	Weak transcription	Brain Anterior Caudate	brain
31	chr7:108212400-108219400	Weak transcription	Fetal Intestine Small	intestine
32	chr7:108212400-108219400	Weak transcription	Gastric	stomach
33	chr7:108212400-108219400	Weak transcription	Right Ventricle	heart
34	chr7:108212400-108219600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:108212400-108219600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:108212400-108219800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:108212400-108220000	Weak transcription	Right Atrium	heart
38	chr7:108212400-108220200	Weak transcription	Psoas Muscle	Psoas
39	chr7:108212400-108221600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr7:108212600-108216200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:108212600-108216400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:108212600-108219400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:108212600-108219400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:108212600-108220400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr7:108212800-108216400	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr7:108212800-108216600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:108212800-108216800	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr7:108212800-108217000	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr7:108212800-108217400	Strong transcription	Primary T cells from cord blood	blood
50	chr7:108213000-108216200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links