Variant report

Variant	rs73713161
Chromosome Location	chr7:108221198-108221199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:108214879..108218601-chr7:108220209..108223552,3	MCF-7	breast:
2	chr7:108219591..108221299-chr7:108232211..108234837,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10452962	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155959	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55657836	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55687634	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963129	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57046095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58052113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60883136	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955463	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713153	1.00[EUR][1000 genomes]
rs73713157	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713159	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713164	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713167	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713168	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713170	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108212000-108222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:108212400-108221600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:108213000-108222200	Weak transcription	HMEC	breast
4	chr7:108214400-108222200	Weak transcription	HSMMtube	muscle
5	chr7:108214400-108222600	Weak transcription	Small Intestine	intestine
6	chr7:108214400-108225000	Weak transcription	Fetal Brain Male	brain
7	chr7:108214600-108222200	Weak transcription	Fetal Kidney	kidney
8	chr7:108215800-108221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:108216000-108222000	Weak transcription	HepG2	liver
10	chr7:108216200-108223000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:108216200-108224600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:108216400-108222400	Weak transcription	Fetal Heart	heart
13	chr7:108216400-108229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:108216600-108222400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:108216800-108224600	Weak transcription	NHEK	skin
16	chr7:108217000-108222400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:108218600-108221600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr7:108219400-108221200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:108219400-108221200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr7:108219400-108221200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:108219400-108221200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:108219400-108221200	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr7:108219400-108221200	ZNF genes & repeats	Thymus	Thymus
24	chr7:108219600-108221200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:108219600-108221200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
26	chr7:108219600-108221200	ZNF genes & repeats	Fetal Stomach	stomach
27	chr7:108219600-108221200	ZNF genes & repeats	Lung	lung
28	chr7:108219800-108221200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
29	chr7:108219800-108221200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:108219800-108221200	ZNF genes & repeats	Left Ventricle	heart
31	chr7:108219800-108221200	ZNF genes & repeats	Pancreas	Pancrea
32	chr7:108220000-108221200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
33	chr7:108220000-108221200	ZNF genes & repeats	Right Atrium	heart
34	chr7:108220200-108222600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:108220400-108221200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:108220400-108221600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr7:108220400-108222000	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:108220400-108222200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:108220400-108222600	Weak transcription	HSMM	muscle
40	chr7:108220400-108222800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr7:108220600-108221200	Weak transcription	Primary T cells from cord blood	blood
42	chr7:108220600-108222200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:108220600-108222200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:108220600-108222200	Weak transcription	Adipose Nuclei	Adipose
45	chr7:108220600-108222200	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:108220600-108222400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr7:108220600-108222400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:108220600-108222400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:108220600-108222400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr7:108220600-108222600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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