Variant report

Variant	rs55657836
Chromosome Location	chr7:108212928-108212929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:108199426-108221976	K562	blood:	n/a	n/a
2	CUX1	chr7:108212921-108213147	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:107786172..107787859-chr7:108212708..108215561,2	MCF-7	breast:
2	chr7:108163122..108173185-chr7:108207236..108216619,40	K562	blood:
3	chr7:108159403..108171484-chr7:108200740..108214365,45	K562	blood:
4	chr7:108162967..108170259-chr7:108208242..108216228,25	MCF-7	breast:
5	chr7:108209600..108213665-chr7:112090307..112092525,3	K562	blood:

No data

Variant related genes	Relation type
PNPLA8	TF binding region
THAP5	TF binding region
ENSG00000006652	Chromatin interaction
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10452962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17155959	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2240450	0.81[AFR][1000 genomes]
rs55687634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55963129	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56010627	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57046095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58052113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58717384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59908458	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60598865	0.81[AFR][1000 genomes]
rs60883136	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713149	0.81[AFR][1000 genomes]
rs73713153	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73713157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713159	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713161	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713164	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713168	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73713173	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs978623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108207400-108213400	Active TSS	GM12878-XiMat	blood
2	chr7:108209400-108213200	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr7:108211200-108214200	Weak transcription	Small Intestine	intestine
4	chr7:108211200-108219400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:108211200-108219600	Weak transcription	Lung	lung
6	chr7:108211400-108213400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:108211400-108215400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:108211400-108216600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:108211400-108217400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:108211400-108219400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:108211400-108219600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:108211400-108219600	Weak transcription	Colonic Mucosa	Colon
13	chr7:108211400-108219600	Weak transcription	Esophagus	oesophagus
14	chr7:108211400-108219600	Weak transcription	Ovary	ovary
15	chr7:108211400-108219800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:108211600-108213000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:108211600-108213400	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:108211600-108213600	Weak transcription	HSMMtube	muscle
19	chr7:108211600-108214400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:108211600-108215800	Weak transcription	Thymus	Thymus
21	chr7:108211600-108219200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:108211600-108219200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:108211600-108219400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:108211600-108219400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:108211600-108220000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:108211800-108213200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr7:108211800-108213200	Weak transcription	Placenta	Placenta
28	chr7:108211800-108213400	Weak transcription	Fetal Thymus	thymus
29	chr7:108211800-108214600	Weak transcription	Stomach Mucosa	stomach
30	chr7:108211800-108218400	Weak transcription	NHLF	lung
31	chr7:108211800-108219800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:108212000-108213000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:108212000-108213200	Weak transcription	Osteobl	bone
34	chr7:108212000-108213400	Weak transcription	A549	lung
35	chr7:108212000-108213400	Weak transcription	NHDF-Ad	bronchial
36	chr7:108212000-108214800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr7:108212000-108219400	Weak transcription	Brain Germinal Matrix	brain
38	chr7:108212000-108219600	Weak transcription	Fetal Stomach	stomach
39	chr7:108212000-108222600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:108212200-108213000	Enhancers	Fetal Intestine Large	intestine
41	chr7:108212200-108213600	Enhancers	Fetal Brain Male	brain
42	chr7:108212200-108214800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:108212200-108219400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:108212200-108219600	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:108212200-108219800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:108212400-108213000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:108212400-108213000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:108212400-108213000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:108212400-108213000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:108212400-108213000	Active TSS	NHEK	skin

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