The 2.0 version of rSNPBase

Variant report

Variant rs10458395
Chromosome Location chr1:169348516-169348517
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:169338000-169351200 Weak transcription Lung lung
2 chr1:169338000-169351200 Weak transcription Spleen Spleen
3 chr1:169338000-169353600 Weak transcription Small Intestine intestine
4 chr1:169338000-169358000 Weak transcription Esophagus oesophagus
5 chr1:169338000-169360000 Weak transcription Fetal Heart heart
6 chr1:169338000-169360400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:169338000-169365200 Weak transcription Gastric stomach
8 chr1:169338000-169365600 Weak transcription Pancreas Pancrea
9 chr1:169338200-169351800 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:169338200-169360400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:169338200-169360400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr1:169338200-169362200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:169338200-169363600 Weak transcription H9 Cell Line embryonic stem cell
14 chr1:169338200-169363600 Weak transcription Stomach Mucosa stomach
15 chr1:169338200-169369000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr1:169338400-169349600 Weak transcription HSMMtube muscle
17 chr1:169338400-169360200 Weak transcription H1 Cell Line embryonic stem cell
18 chr1:169338400-169362600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr1:169338600-169349800 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr1:169338600-169351400 Weak transcription Thymus Thymus
21 chr1:169338600-169352200 Weak transcription Aorta Aorta
22 chr1:169338600-169352200 Weak transcription Fetal Stomach stomach
23 chr1:169338600-169352400 Weak transcription Fetal Intestine Small intestine
24 chr1:169338600-169352800 Weak transcription ES-I3 Cell Line embryonic stem cell
25 chr1:169338600-169357600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr1:169339200-169351800 Weak transcription Fetal Brain Male brain
27 chr1:169339600-169351000 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr1:169340200-169356400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr1:169340400-169366000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:169341000-169351400 Weak transcription Brain Hippocampus Middle brain
31 chr1:169341200-169349600 Weak transcription GM12878-XiMat blood
32 chr1:169341200-169367400 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:169342800-169351200 Weak transcription Fetal Muscle Leg muscle
34 chr1:169343000-169351400 Weak transcription K562 blood
35 chr1:169344200-169360200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:169344800-169348600 Strong transcription Adipose Nuclei Adipose
37 chr1:169344800-169359200 Strong transcription HSMM muscle
38 chr1:169344800-169361200 Strong transcription Primary monocytes fromperipheralblood blood
39 chr1:169344800-169362600 Strong transcription Primary T cells fromperipheralblood blood
40 chr1:169344800-169365400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
41 chr1:169345000-169355400 Strong transcription Rectal Mucosa Donor 31 rectum
42 chr1:169345000-169360800 Strong transcription Monocytes-CD14+_RO01746 blood
43 chr1:169345000-169366000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr1:169345200-169348600 Strong transcription Primary neutrophils fromperipheralblood blood
45 chr1:169345200-169348600 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr1:169345200-169352200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:169345200-169352400 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:169345200-169353600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:169345400-169348600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
50 chr1:169345400-169353600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015