Variant report

Variant	rs10460956
Chromosome Location	chr3:34108438-34108439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11717359	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13073303	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1440388	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17031278	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2165298	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34288141	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34652325	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56022412	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10460956	ASPH	trans	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34107000-34109600	Enhancers	HSMMtube	muscle
2	chr3:34107200-34109600	Enhancers	Fetal Muscle Leg	muscle
3	chr3:34107400-34108800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:34107600-34110600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:34107800-34110800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:34108000-34109000	Weak transcription	HSMM	muscle
7	chr3:34108000-34110000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:34108000-34111000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:34108200-34109600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:34108200-34110600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:34108200-34112800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr3:34108400-34108800	Enhancers	Brain Angular Gyrus	brain
13	chr3:34108400-34109200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:34108400-34109400	Enhancers	Fetal Thymus	thymus
15	chr3:34108400-34109600	Enhancers	Thymus	Thymus
16	chr3:34108400-34109800	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links