Variant report

Variant	rs1440388
Chromosome Location	chr3:34111006-34111007
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10460956	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11717359	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13073303	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17031278	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2165298	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34288141	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34652325	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35423629	0.82[AMR][1000 genomes]
rs56022412	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34108200-34112800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34109800-34112000	Weak transcription	GM12878-XiMat	blood
3	chr3:34110000-34114000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:34110000-34114600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:34110200-34114200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:34110400-34112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:34110400-34114800	Enhancers	Fetal Thymus	thymus
8	chr3:34110400-34115800	Enhancers	Thymus	Thymus
9	chr3:34110600-34112200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:34110800-34111800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:34110800-34112200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:34110800-34114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:34110800-34115600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:34111000-34114400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:34111000-34119000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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