Variant report

Variant	rs34652325
Chromosome Location	chr3:34109231-34109232
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34097927..34099994-chr3:34108319..34110048,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10460956	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11717359	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13073303	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1440388	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17031278	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2165298	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34288141	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56022412	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522881	chr3:33736126-34241686	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34107000-34109600	Enhancers	HSMMtube	muscle
2	chr3:34107200-34109600	Enhancers	Fetal Muscle Leg	muscle
3	chr3:34107600-34110600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:34107800-34110800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:34108000-34110000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:34108000-34111000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:34108200-34109600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:34108200-34110600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:34108200-34112800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:34108400-34109400	Enhancers	Fetal Thymus	thymus
11	chr3:34108400-34109600	Enhancers	Thymus	Thymus
12	chr3:34108400-34109800	Enhancers	GM12878-XiMat	blood
13	chr3:34108600-34109400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:34108600-34110400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:34108600-34110400	Enhancers	Fetal Brain Male	brain
16	chr3:34108800-34109600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:34108800-34110000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:34108800-34110400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:34109000-34109600	Enhancers	Brain Anterior Caudate	brain
20	chr3:34109000-34109800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:34109000-34110600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr3:34109200-34109400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:34109200-34110400	Enhancers	Fetal Brain Female	brain
24	chr3:34109200-34110600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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