Variant report
| Variant | rs10461082 |
|---|---|
| Chromosome Location | chr4:21159369-21159370 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:21159106..21161937-chr4:21165905..21168685,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10516374 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10938837 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11730710 | 0.92[ASN][1000 genomes] |
| rs1364838 | 0.98[ASN][1000 genomes] |
| rs1364839 | 0.93[ASN][1000 genomes] |
| rs17446667 | 1.00[YRI][hapmap] |
| rs17447922 | 0.91[ASN][1000 genomes] |
| rs17447985 | 0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17448106 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17448392 | 0.91[ASN][1000 genomes] |
| rs17505566 | 1.00[YRI][hapmap] |
| rs17506080 | 1.00[YRI][hapmap] |
| rs17506108 | 1.00[YRI][hapmap] |
| rs2162080 | 0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28721307 | 0.91[ASN][1000 genomes] |
| rs3864185 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56052027 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6835991 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014941 | chr4:20611726-21345226 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537053 | chr4:20611726-21345226 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv878746 | chr4:21054348-21169062 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv878747 | chr4:21057794-21169062 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv878748 | chr4:21113871-21169062 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv4264 | chr4:21138131-21199262 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
