The 2.0 version of rSNPBase

Variant report

Variant rs10463409
Chromosome Location chr5:148211255-148211256
allele C/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:148205400-148212200 Active TSS Brain Hippocampus Middle brain
2 chr5:148206200-148211800 Flanking Active TSS Primary B cells from cord blood blood
3 chr5:148207200-148211800 Active TSS Primary T killer memory cells from peripheral blood blood
4 chr5:148207600-148211600 Active TSS Rectal Mucosa Donor 29 rectum
5 chr5:148207600-148212400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr5:148207600-148222800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr5:148208000-148212800 Flanking Active TSS Adipose Nuclei Adipose
8 chr5:148208200-148212600 Transcr. at gene 5' and 3' NHEK skin
9 chr5:148208200-148213000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr5:148208400-148212800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr5:148208800-148213000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
12 chr5:148209000-148211400 Weak transcription Small Intestine intestine
13 chr5:148209000-148211600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
14 chr5:148209000-148213000 Enhancers Primary T helper cells fromperipheralblood blood
15 chr5:148209000-148214000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr5:148209400-148211800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
17 chr5:148209400-148213000 Enhancers Primary T helper 17 cells PMA-I stimulated --
18 chr5:148209400-148218400 Enhancers Primary B cells from peripheral blood blood
19 chr5:148209600-148211400 Active TSS Right Ventricle heart
20 chr5:148209600-148223800 Weak transcription Aorta Aorta
21 chr5:148209800-148211800 Enhancers Psoas Muscle Psoas
22 chr5:148209800-148213000 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
23 chr5:148209800-148218000 Weak transcription Brain Angular Gyrus brain
24 chr5:148210000-148211400 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr5:148210000-148212400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr5:148210000-148212400 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr5:148210000-148213200 Enhancers Primary neutrophils fromperipheralblood blood
28 chr5:148210000-148213600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr5:148210000-148223400 Weak transcription Placenta Placenta
30 chr5:148210200-148211400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr5:148210200-148211400 Genic enhancers HSMM muscle
32 chr5:148210200-148211400 Enhancers NHDF-Ad bronchial
33 chr5:148210200-148211600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
34 chr5:148210200-148213000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
35 chr5:148210400-148211800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
36 chr5:148210400-148212200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr5:148210400-148212400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr5:148210600-148211600 Enhancers Duodenum Smooth Muscle Duodenum
39 chr5:148210600-148212400 Active TSS Primary T helper naive cells from peripheral blood blood
40 chr5:148210600-148212400 Weak transcription Colon Smooth Muscle Colon
41 chr5:148210600-148213000 Enhancers Fetal Thymus thymus
42 chr5:148210800-148211400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
43 chr5:148211000-148211400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:148211000-148211400 Flanking Active TSS Liver Liver
45 chr5:148211000-148211400 Flanking Bivalent TSS/Enh Duodenum Mucosa Duodenum
46 chr5:148211000-148211400 Enhancers Esophagus oesophagus
47 chr5:148211000-148211400 Flanking Active TSS Left Ventricle heart
48 chr5:148211000-148211400 Active TSS Stomach Smooth Muscle stomach
49 chr5:148211000-148211400 Enhancers Spleen Spleen
50 chr5:148211000-148211600 Flanking Active TSS Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015