Variant report

Variant	rs10466381
Chromosome Location	chr11:16451407-16451408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10732463	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10734241	1.00[AMR][1000 genomes]
rs10734242	1.00[AMR][1000 genomes]
rs10734243	1.00[AMR][1000 genomes]
rs10734244	1.00[AMR][1000 genomes]
rs10734245	1.00[AMR][1000 genomes]
rs10734246	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10741697	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1123186	1.00[AMR][1000 genomes]
rs1393925	1.00[AMR][1000 genomes]
rs1393929	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1466927	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1466928	1.00[AMR][1000 genomes]
rs1503445	1.00[YRI][hapmap]
rs1503451	1.00[YRI][hapmap]
rs2062813	1.00[AMR][1000 genomes]
rs2134611	1.00[AMR][1000 genomes]
rs2352237	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2938283	1.00[AMR][1000 genomes]
rs297323	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs297329	1.00[AMR][1000 genomes]
rs297330	1.00[AMR][1000 genomes]
rs4757396	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs60970479	1.00[AMR][1000 genomes]
rs6486289	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7104395	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7116645	1.00[AMR][1000 genomes]
rs7123022	1.00[AMR][1000 genomes]
rs7934582	1.00[AMR][1000 genomes]
rs7935139	1.00[AMR][1000 genomes]
rs7945381	1.00[AMR][1000 genomes]
rs959966	1.00[AMR][1000 genomes]
rs967423	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs967424	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16450800-16452800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr11:16450800-16453000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16451200-16453400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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