Variant report

Variant	rs2938283
Chromosome Location	chr11:16385204-16385205
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16364977..16366549-chr11:16384856..16387752,2	K562	blood:
2	chr11:16383712..16391203-chr11:16391970..16396695,10	K562	blood:
3	chr11:16377809..16381179-chr11:16381397..16386476,5	K562	blood:
4	chr11:16384106..16387046-chr11:16399381..16401065,2	K562	blood:
5	chr11:16372882..16374995-chr11:16384408..16387149,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10466381	1.00[AMR][1000 genomes]
rs10732463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734242	1.00[AMR][1000 genomes]
rs10734243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10741697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1123186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1393925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1393929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1503445	0.86[AFR][1000 genomes]
rs1503451	1.00[AFR][1000 genomes]
rs2062813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2134611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2352237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297336	0.93[AFR][1000 genomes]
rs4757396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934582	1.00[AMR][1000 genomes]
rs7945381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs959966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16379000-16387200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:16379200-16387400	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:16379800-16386600	Weak transcription	Fetal Brain Female	brain
4	chr11:16380400-16385400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16380400-16387200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16381600-16386000	Enhancers	K562	blood
7	chr11:16382000-16385400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:16382800-16385400	Weak transcription	Fetal Intestine Small	intestine
9	chr11:16383800-16386000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:16384600-16385800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr11:16385000-16387600	Enhancers	Fetal Heart	heart
12	chr11:16385000-16389200	Enhancers	Fetal Intestine Large	intestine
13	chr11:16385000-16390200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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