Variant report

Variant	rs10732463
Chromosome Location	chr11:16415091-16415092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16362185..16364799-chr11:16415077..16417041,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10466381	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10734241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734242	1.00[AMR][1000 genomes]
rs10734243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10734246	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10741697	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1123186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1393925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1393929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466927	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1466928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1503445	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1503451	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2062813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2134611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2352237	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2938283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297323	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297330	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs297336	0.93[AFR][1000 genomes]
rs4757396	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60970479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6486289	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104395	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7123022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934582	1.00[AMR][1000 genomes]
rs7935139	1.00[AMR][1000 genomes]
rs7945381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs959966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967423	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs967424	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16406800-16415200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16409000-16419200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16410000-16418800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16414200-16416400	Enhancers	Fetal Intestine Small	intestine
5	chr11:16414400-16415200	Enhancers	Small Intestine	intestine
6	chr11:16414400-16415400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16414600-16415200	Flanking Active TSS	K562	blood
8	chr11:16414600-16415400	Enhancers	Brain Germinal Matrix	brain
9	chr11:16414600-16415400	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:16414600-16415400	Enhancers	Fetal Heart	heart
11	chr11:16415000-16415400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr11:16415000-16415800	Enhancers	Fetal Intestine Large	intestine
13	chr11:16415000-16416400	Weak transcription	Liver	Liver

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