Variant report

Variant	rs10466735
Chromosome Location	chr11:76616348-76616349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76571420..76573051-chr11:76616236..76618348,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11236971	1.00[AMR][1000 genomes]
rs11237007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237009	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237011	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282315	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283933	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294141	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28859077	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58965767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003396	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101837	1.00[AMR][1000 genomes]
rs7101915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117397	1.00[AMR][1000 genomes]
rs7121715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:76600800-76616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:76600800-76617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:76601400-76617000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr11:76608800-76622600	Weak transcription	Left Ventricle	heart
6	chr11:76613600-76631200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:76613800-76618600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr11:76613800-76622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:76613800-76622600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:76614000-76617200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:76614800-76617000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:76615000-76616800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:76615000-76617000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:76615000-76617000	Weak transcription	HMEC	breast
15	chr11:76615000-76620200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:76615400-76617000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:76615600-76616400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:76615600-76622200	Weak transcription	Small Intestine	intestine
19	chr11:76615600-76631200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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