Variant report

Variant	rs7925805
Chromosome Location	chr11:76604693-76604694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76602692..76604859-chr11:76610670..76613560,2	K562	blood:
2	chr11:76572033..76573860-chr11:76603838..76606079,2	MCF-7	breast:
3	chr11:76602692..76606775-chr11:76611871..76613560,3	K562	blood:
4	chr11:76493976..76496042-chr11:76602744..76605422,2	K562	blood:

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10466735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236971	1.00[AMR][1000 genomes]
rs11237007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237009	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237011	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282315	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283933	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294141	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28859077	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58965767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003396	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7101837	1.00[AMR][1000 genomes]
rs7101915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117397	1.00[AMR][1000 genomes]
rs7121715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947572	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76581200-76613400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:76596800-76614600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:76597000-76605200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:76597400-76611200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:76597600-76613600	Weak transcription	NHEK	skin
7	chr11:76597800-76614200	Weak transcription	HMEC	breast
8	chr11:76600200-76613600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:76600600-76605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76600800-76616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:76600800-76617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:76601200-76609000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:76601400-76617000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr11:76602200-76606600	Enhancers	Brain Cingulate Gyrus	brain
15	chr11:76603000-76605000	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:76603000-76605400	Weak transcription	HUVEC	blood vessel
17	chr11:76603000-76606600	Enhancers	Brain Hippocampus Middle	brain
18	chr11:76603000-76606600	Weak transcription	Hela-S3	cervix
19	chr11:76603000-76611800	Weak transcription	Brain Angular Gyrus	brain
20	chr11:76603000-76612000	Weak transcription	K562	blood
21	chr11:76603000-76613400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:76603800-76605000	Enhancers	Brain Substantia Nigra	brain
23	chr11:76604000-76606400	Weak transcription	Adipose Nuclei	Adipose
24	chr11:76604200-76605400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr11:76604400-76604800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:76604400-76605600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:76604400-76609200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:76604400-76613000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:76604600-76605200	Enhancers	Brain Anterior Caudate	brain

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