Variant report

Variant	rs7947572
Chromosome Location	chr11:76572729-76572730
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76571922..76572822-chr3:53915731..53916676,2	Hela-S3	cervix:
2	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
3	chr11:76494634..76496487-chr11:76571954..76573983,2	K562	blood:
4	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
5	chr11:76572033..76573860-chr11:76603838..76606079,2	MCF-7	breast:
6	chr11:76572318..76575156-chr11:76600227..76602502,2	K562	blood:
7	chr11:76493101..76495858-chr11:76570734..76573156,2	MCF-7	breast:
8	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000113812	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000222888	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10466735	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236971	1.00[AMR][1000 genomes]
rs11237007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237009	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237011	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11237034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11501930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282315	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289748	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294141	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12295481	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28859077	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58965767	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60003396	1.00[AMR][1000 genomes]
rs7101837	1.00[AMR][1000 genomes]
rs7101915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109935	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7117397	1.00[AMR][1000 genomes]
rs7121715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7942346	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76571400-76573000	Flanking Active TSS	Primary hematopoietic stem cells	blood
2	chr11:76571400-76573000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:76571400-76573000	Active TSS	Psoas Muscle	Psoas
4	chr11:76571400-76573000	Active TSS	HSMM	muscle
5	chr11:76571400-76573400	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:76571600-76572800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr11:76571600-76572800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:76571600-76572800	Active TSS	A549	lung
9	chr11:76571600-76572800	Active TSS	NHDF-Ad	bronchial
10	chr11:76571600-76573000	Active TSS	Sigmoid Colon	Sigmoid Colon
11	chr11:76571600-76573400	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr11:76571800-76573000	Active TSS	NHEK	skin
13	chr11:76572000-76572800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:76572000-76572800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:76572000-76572800	Active TSS	Gastric	stomach
16	chr11:76572000-76572800	Active TSS	Small Intestine	intestine
17	chr11:76572000-76573200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:76572000-76573200	Flanking Active TSS	Placenta	Placenta
19	chr11:76572200-76572800	Flanking Active TSS	Primary B cells from peripheral blood	blood
20	chr11:76572200-76572800	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr11:76572200-76572800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr11:76572200-76572800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr11:76572200-76572800	Flanking Active TSS	Fetal Thymus	thymus
24	chr11:76572200-76573000	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr11:76572200-76573000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr11:76572200-76573000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
27	chr11:76572200-76573000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:76572200-76573000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:76572200-76573000	Flanking Active TSS	Thymus	Thymus
30	chr11:76572200-76573200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr11:76572200-76573200	Flanking Active TSS	Dnd41	blood
32	chr11:76572400-76572800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr11:76572400-76572800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
34	chr11:76572400-76572800	Flanking Active TSS	Fetal Muscle Leg	muscle
35	chr11:76572400-76572800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
36	chr11:76572400-76572800	Flanking Active TSS	HSMMtube	muscle
37	chr11:76572400-76573000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:76572400-76573000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:76572400-76573000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:76572400-76573000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
41	chr11:76572400-76573000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr11:76572400-76573000	Flanking Active TSS	Liver	Liver
43	chr11:76572400-76573000	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr11:76572400-76573000	Flanking Active TSS	Fetal Brain Male	brain
45	chr11:76572400-76573000	Flanking Active TSS	Fetal Brain Female	brain
46	chr11:76572400-76573000	Flanking Active TSS	Fetal Heart	heart
47	chr11:76572400-76573000	Flanking Active TSS	Fetal Muscle Trunk	muscle
48	chr11:76572400-76573000	Flanking Active TSS	Pancreas	Pancrea
49	chr11:76572400-76573000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
50	chr11:76572400-76573000	Flanking Active TSS	Right Atrium	heart

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