Variant report

Variant	rs10467381
Chromosome Location	chr13:49125230-49125231
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10076	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11840819	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11842402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11842662	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378245	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071917	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071960	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs174854	0.95[AMR][1000 genomes]
rs198565	0.95[AMR][1000 genomes]
rs198573	0.95[AMR][1000 genomes]
rs198581	0.90[AMR][1000 genomes]
rs198583	0.95[AMR][1000 genomes]
rs198587	0.95[AMR][1000 genomes]
rs2984828	0.95[AMR][1000 genomes]
rs3020646	0.95[AMR][1000 genomes]
rs7322110	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7332631	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316384	0.82[AMR][1000 genomes]
rs9316387	0.82[AMR][1000 genomes]
rs9316390	0.83[AMR][1000 genomes]
rs9316391	0.83[AMR][1000 genomes]
rs9316392	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9316403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332025	0.83[AMR][1000 genomes]
rs9332036	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332050	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9332053	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332066	0.95[AMR][1000 genomes]
rs9591167	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9591170	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591171	0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9591174	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595913	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9595914	0.82[AMR][1000 genomes]
rs9595917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9595930	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49119600-49126000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:49124600-49125400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr13:49124600-49126400	ZNF genes & repeats	Dnd41	blood
4	chr13:49124800-49125800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:49125200-49126000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr13:49125200-49126400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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