Variant report

Variant	rs9595936
Chromosome Location	chr13:49162175-49162176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10076	0.90[AMR][1000 genomes]
rs10467381	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11840819	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11842402	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11842662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378245	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071917	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17071960	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs174854	0.90[AMR][1000 genomes]
rs198565	0.90[AMR][1000 genomes]
rs198573	0.90[AMR][1000 genomes]
rs198581	0.85[AMR][1000 genomes]
rs198583	0.90[AMR][1000 genomes]
rs198587	0.90[AMR][1000 genomes]
rs2984828	0.90[AMR][1000 genomes]
rs3020646	0.90[AMR][1000 genomes]
rs7322110	0.95[AMR][1000 genomes]
rs7332631	1.00[EUR][1000 genomes]
rs7338141	0.89[AFR][1000 genomes]
rs7984270	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316392	0.90[AMR][1000 genomes]
rs9316403	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316406	0.89[AFR][1000 genomes]
rs9332036	0.95[AMR][1000 genomes]
rs9332050	0.90[AMR][1000 genomes]
rs9332053	0.95[AMR][1000 genomes]
rs9332066	0.90[AMR][1000 genomes]
rs9591167	0.95[AMR][1000 genomes]
rs9591170	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591171	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9591174	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591175	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9595913	0.90[AMR][1000 genomes]
rs9595917	0.95[AMR][1000 genomes]
rs9595930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv455881	chr13:49134412-49169570	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv561591	chr13:49134412-49169570	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49157600-49164800	Weak transcription	Gastric	stomach
2	chr13:49159000-49162200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr13:49159200-49163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:49159600-49162400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:49159800-49164200	Weak transcription	Small Intestine	intestine
6	chr13:49160000-49166000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:49160200-49166200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:49161000-49169600	Weak transcription	HSMM	muscle
9	chr13:49161200-49163800	Weak transcription	Stomach Mucosa	stomach
10	chr13:49161200-49164200	Weak transcription	Fetal Heart	heart
11	chr13:49161200-49164200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr13:49161200-49164200	Weak transcription	HSMMtube	muscle
13	chr13:49161200-49165400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:49161200-49167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:49161200-49167400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr13:49161400-49162400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr13:49161400-49162400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:49161400-49162600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:49161400-49162600	Weak transcription	HepG2	liver
20	chr13:49161400-49164200	Weak transcription	Fetal Muscle Leg	muscle
21	chr13:49161400-49164800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:49161400-49164800	Weak transcription	Pancreas	Pancrea
23	chr13:49161400-49169600	Weak transcription	Right Atrium	heart
24	chr13:49161400-49176400	Weak transcription	Right Ventricle	heart
25	chr13:49161600-49164600	Weak transcription	Left Ventricle	heart
26	chr13:49161600-49164800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr13:49161600-49165000	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links