The 2.0 version of rSNPBase

Variant report

Variant rs198573
Chromosome Location chr13:49023487-49023488
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48990800-49030800 Weak transcription Ovary ovary
2 chr13:48991400-49030600 Weak transcription Spleen Spleen
3 chr13:48999000-49024400 Weak transcription Fetal Muscle Leg muscle
4 chr13:49001400-49024600 Weak transcription Fetal Intestine Small intestine
5 chr13:49006800-49030400 Weak transcription Brain Cingulate Gyrus brain
6 chr13:49007000-49027600 Weak transcription Primary T cells from cord blood blood
7 chr13:49008000-49028600 Weak transcription HepG2 liver
8 chr13:49008800-49030800 Weak transcription Placenta Placenta
9 chr13:49009000-49030600 Weak transcription Gastric stomach
10 chr13:49009000-49030600 Weak transcription Lung lung
11 chr13:49011200-49028800 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr13:49011800-49023600 Weak transcription Fetal Muscle Trunk muscle
13 chr13:49012000-49027400 Weak transcription Left Ventricle heart
14 chr13:49012000-49028800 Weak transcription Pancreas Pancrea
15 chr13:49012400-49024400 Weak transcription Fetal Heart heart
16 chr13:49015200-49027400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr13:49017400-49062200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
18 chr13:49018000-49024000 Strong transcription Dnd41 blood
19 chr13:49018000-49062400 Weak transcription Fetal Brain Male brain
20 chr13:49018400-49025200 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr13:49018600-49023800 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr13:49019000-49030600 Weak transcription Fetal Stomach stomach
23 chr13:49019800-49023600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
24 chr13:49019800-49024000 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr13:49020000-49024000 Weak transcription Primary B cells from peripheral blood blood
26 chr13:49020000-49028600 Weak transcription Thymus Thymus
27 chr13:49020400-49023800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr13:49020400-49024000 Enhancers NHDF-Ad bronchial
29 chr13:49020800-49062000 Weak transcription Fetal Kidney kidney
30 chr13:49021000-49027000 Weak transcription Colon Smooth Muscle Colon
31 chr13:49021000-49027400 Weak transcription Fetal Thymus thymus
32 chr13:49021200-49027600 Weak transcription Aorta Aorta
33 chr13:49021200-49027600 Weak transcription HSMMtube muscle
34 chr13:49021200-49058600 Weak transcription Hela-S3 cervix
35 chr13:49021400-49030400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr13:49022200-49023800 Enhancers HMEC breast
37 chr13:49022200-49024000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
38 chr13:49022200-49024000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr13:49022200-49024000 Enhancers NHLF lung
40 chr13:49022400-49023800 Enhancers Primary hematopoietic stem cells short term culture blood
41 chr13:49022400-49023800 Enhancers Primary T helper naive cells fromperipheralblood blood
42 chr13:49022400-49023800 Enhancers Primary T helper 17 cells PMA-I stimulated --
43 chr13:49022400-49023800 Enhancers NHEK skin
44 chr13:49022400-49024000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr13:49022400-49024000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
46 chr13:49022400-49024000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
47 chr13:49022400-49024200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
48 chr13:49022600-49024000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr13:49022800-49023600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr13:49022800-49023600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015