The 2.0 version of rSNPBase

Variant report

Variant rs411661
Chromosome Location chr13:48999813-48999814
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48976000-49005800 Weak transcription Hela-S3 cervix
2 chr13:48987600-49001800 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr13:48987600-49005600 Weak transcription Brain Hippocampus Middle brain
4 chr13:48987600-49005800 Weak transcription Aorta Aorta
5 chr13:48987600-49005800 Weak transcription HSMM muscle
6 chr13:48987600-49010400 Weak transcription Psoas Muscle Psoas
7 chr13:48987800-49003000 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr13:48987800-49005200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
9 chr13:48987800-49006000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr13:48987800-49006200 Weak transcription A549 lung
11 chr13:48987800-49006400 Weak transcription Rectal Smooth Muscle rectum
12 chr13:48988000-49000200 Weak transcription HUVEC blood vessel
13 chr13:48988600-49003400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
14 chr13:48988800-49005600 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr13:48989800-49003000 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr13:48990200-49005200 Weak transcription NHDF-Ad bronchial
17 chr13:48990600-49003000 Weak transcription Adipose Nuclei Adipose
18 chr13:48990800-49004600 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr13:48990800-49011600 Weak transcription Left Ventricle heart
20 chr13:48990800-49030800 Weak transcription Ovary ovary
21 chr13:48991400-49001000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr13:48991400-49001000 Weak transcription Lung lung
23 chr13:48991400-49003400 Weak transcription Right Ventricle heart
24 chr13:48991400-49005800 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr13:48991400-49006200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr13:48991400-49010200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
27 chr13:48991400-49013200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr13:48991400-49018600 Weak transcription Thymus Thymus
29 chr13:48991400-49019200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr13:48991400-49030600 Weak transcription Spleen Spleen
31 chr13:48991600-49000800 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr13:48991600-49005800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr13:48991600-49010800 Weak transcription Fetal Stomach stomach
34 chr13:48991800-49000400 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr13:48991800-49003000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr13:48991800-49005600 Weak transcription Fetal Lung lung
37 chr13:48991800-49010000 Weak transcription Primary B cells from peripheral blood blood
38 chr13:48991800-49018800 Weak transcription Fetal Thymus thymus
39 chr13:48992000-49005200 Weak transcription Primary T cells from cord blood blood
40 chr13:48992000-49005800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr13:48992200-49001000 Weak transcription Muscle Satellite Cultured Cells --
42 chr13:48994800-49018000 Weak transcription Primary B cells from cord blood blood
43 chr13:48995400-49000400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr13:48996600-49010400 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr13:48997800-49011200 Weak transcription Cortex derived primary cultured neurospheres brain
46 chr13:48998200-49005400 Weak transcription Primary hematopoietic stem cells blood
47 chr13:48998400-49005800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr13:48998600-49005800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
49 chr13:48998800-49001200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr13:48999000-49000600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015