Variant report

Variant	rs198580
Chromosome Location	chr13:49033747-49033748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17071937	1.00[CEU][hapmap]
rs174858	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs198560	0.92[AFR][1000 genomes]
rs198566	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs198567	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs198572	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs198582	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs198589	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs198613	0.91[AFR][1000 genomes]
rs2156910	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2804087	0.83[AFR][1000 genomes]
rs2804088	0.82[YRI][hapmap];0.94[AFR][1000 genomes]
rs2804089	0.81[AFR][1000 genomes]
rs2854363	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs367438	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs411661	0.82[AFR][1000 genomes]
rs4151420	1.00[CEU][hapmap]
rs4151421	1.00[CEU][hapmap]
rs4151424	1.00[CEU][hapmap]
rs4151426	1.00[CEU][hapmap]
rs4151440	1.00[CEU][hapmap]
rs4151463	1.00[CEU][hapmap]
rs4151469	1.00[CEU][hapmap]
rs4151475	1.00[CEU][hapmap]
rs4151480	1.00[CEU][hapmap]
rs4151498	1.00[CEU][hapmap]
rs4151505	1.00[CEU][hapmap]
rs4151529	1.00[CEU][hapmap]
rs4151536	1.00[CEU][hapmap]
rs4151567	1.00[CEU][hapmap]
rs4151610	1.00[CEU][hapmap]
rs428431	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs443211	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449151	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449268	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4587857	0.92[AFR][1000 genomes]
rs7326934	1.00[CEU][hapmap]
rs9316386	1.00[CEU][hapmap]
rs9316396	1.00[CEU][hapmap]
rs9331999	1.00[CEU][hapmap]
rs9332031	1.00[CEU][hapmap]
rs9332037	1.00[CEU][hapmap]
rs9332049	1.00[CEU][hapmap]
rs9332303	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49017400-49062200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:49018000-49062400	Weak transcription	Fetal Brain Male	brain
3	chr13:49020800-49062000	Weak transcription	Fetal Kidney	kidney
4	chr13:49021200-49058600	Weak transcription	Hela-S3	cervix
5	chr13:49023800-49061000	Weak transcription	Small Intestine	intestine
6	chr13:49023800-49073800	Weak transcription	NH-A	brain
7	chr13:49024000-49059000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr13:49025400-49034400	Weak transcription	Fetal Lung	lung
9	chr13:49025600-49041200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr13:49025600-49056800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:49025600-49066200	Weak transcription	Psoas Muscle	Psoas
12	chr13:49026600-49039400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr13:49026800-49039400	Strong transcription	Dnd41	blood
14	chr13:49026800-49039600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr13:49027000-49039800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr13:49027200-49039200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:49027200-49039600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr13:49027200-49039800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:49027400-49035400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr13:49027400-49036800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr13:49027400-49039800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:49027600-49039800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:49027600-49049200	Weak transcription	A549	lung
24	chr13:49027800-49035200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:49027800-49039200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:49027800-49043000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr13:49028000-49039200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr13:49028000-49071000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr13:49028600-49039800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr13:49028800-49034000	Strong transcription	Primary T cells from cord blood	blood
31	chr13:49028800-49035000	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:49029000-49034400	Strong transcription	Primary B cells from cord blood	blood
33	chr13:49029000-49038600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr13:49029000-49038600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr13:49029000-49046000	Weak transcription	HSMMtube	muscle
36	chr13:49029200-49033800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr13:49029200-49038800	Weak transcription	Osteobl	bone
38	chr13:49029200-49062000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:49029400-49052400	Weak transcription	K562	blood
40	chr13:49030000-49036400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr13:49030200-49037000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:49030400-49033800	Strong transcription	NHDF-Ad	bronchial
43	chr13:49030400-49038200	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr13:49030600-49035400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr13:49030600-49070600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr13:49030800-49038800	Weak transcription	HUVEC	blood vessel
47	chr13:49031000-49033800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:49031000-49034400	Strong transcription	Esophagus	oesophagus
49	chr13:49031000-49039600	Strong transcription	Fetal Thymus	thymus
50	chr13:49031400-49034400	Weak transcription	Colon Smooth Muscle	Colon

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