Variant report

Variant	rs4151421
Chromosome Location	chr13:48879736-48879737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:48879479-48879805	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr13:48876411-48880767	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48877164..48879255-chr13:48879403..48881439,2	K562	blood:
2	chr13:48879143..48880782-chr13:48887073..48889128,2	K562	blood:

Variant related genes	Relation type
LINC00441	TF binding region
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs174858	1.00[CEU][hapmap]
rs198580	1.00[CEU][hapmap]
rs198582	1.00[CEU][hapmap]
rs198589	1.00[CEU][hapmap]
rs2156910	1.00[CEU][hapmap]
rs367438	1.00[CEU][hapmap]
rs4151420	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151424	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151426	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151440	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151445	1.00[EUR][1000 genomes]
rs4151463	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151475	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151480	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151484	0.86[EUR][1000 genomes]
rs4151498	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151505	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151529	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151536	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151555	1.00[EUR][1000 genomes]
rs4151560	1.00[EUR][1000 genomes]
rs4151564	1.00[EUR][1000 genomes]
rs4151567	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151569	0.86[EUR][1000 genomes]
rs4151578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151610	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449151	1.00[CEU][hapmap]
rs449268	1.00[CEU][hapmap]
rs7325162	1.00[EUR][1000 genomes]
rs7326934	1.00[CEU][hapmap]
rs73490887	0.86[EUR][1000 genomes]
rs9316386	1.00[CEU][hapmap]
rs9331953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331968	1.00[EUR][1000 genomes]
rs9331980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332037	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332049	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332253	0.83[EUR][1000 genomes]
rs9332258	0.83[EUR][1000 genomes]
rs9332273	0.83[EUR][1000 genomes]
rs9332280	1.00[CEU][hapmap]
rs9332282	0.83[EUR][1000 genomes]
rs9332303	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48876800-48879800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr13:48876800-48880000	Active TSS	K562	blood
3	chr13:48876800-48880200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:48877000-48879800	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr13:48877000-48879800	Active TSS	Fetal Muscle Leg	muscle
6	chr13:48877000-48879800	Active TSS	Right Atrium	heart
7	chr13:48877000-48880000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:48877000-48880000	Active TSS	HSMMtube	muscle
9	chr13:48877000-48880200	Active TSS	Muscle Satellite Cultured Cells	--
10	chr13:48877000-48880200	Active TSS	NHLF	lung
11	chr13:48877200-48879800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:48877200-48879800	Active TSS	NHDF-Ad	bronchial
13	chr13:48877200-48880000	Active TSS	Aorta	Aorta
14	chr13:48877200-48880200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:48877400-48879800	Active TSS	Hela-S3	cervix
16	chr13:48877400-48880000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:48878400-48880000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:48878400-48880400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:48878800-48880000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:48878800-48880200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr13:48878800-48880400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:48878800-48890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:48879000-48879800	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr13:48879000-48879800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr13:48879000-48879800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr13:48879000-48879800	Flanking Active TSS	Adipose Nuclei	Adipose
27	chr13:48879000-48879800	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr13:48879000-48879800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr13:48879000-48879800	Weak transcription	Gastric	stomach
30	chr13:48879000-48879800	Weak transcription	Pancreas	Pancrea
31	chr13:48879000-48879800	Weak transcription	Small Intestine	intestine
32	chr13:48879000-48879800	Flanking Active TSS	Thymus	Thymus
33	chr13:48879000-48879800	Weak transcription	Spleen	Spleen
34	chr13:48879000-48879800	Flanking Active TSS	Dnd41	blood
35	chr13:48879000-48880000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr13:48879000-48880000	Flanking Active TSS	HUVEC	blood vessel
37	chr13:48879000-48880200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:48879000-48880200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr13:48879000-48880200	Flanking Active TSS	GM12878-XiMat	blood
40	chr13:48879000-48880600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr13:48879000-48880800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
42	chr13:48879000-48880800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr13:48879000-48882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr13:48879000-48891000	Weak transcription	Esophagus	oesophagus
45	chr13:48879200-48879800	Weak transcription	Lung	lung
46	chr13:48879200-48879800	Active TSS	HepG2	liver
47	chr13:48879200-48880000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:48879200-48880000	Weak transcription	Placenta	Placenta
49	chr13:48879200-48880200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:48879200-48880200	Enhancers	Fetal Heart	heart

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