Variant report

Variant	rs4151555
Chromosome Location	chr13:49009939-49009940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs4151420	1.00[EUR][1000 genomes]
rs4151421	1.00[EUR][1000 genomes]
rs4151424	1.00[EUR][1000 genomes]
rs4151425	1.00[EUR][1000 genomes]
rs4151426	1.00[EUR][1000 genomes]
rs4151430	1.00[EUR][1000 genomes]
rs4151433	1.00[EUR][1000 genomes]
rs4151436	1.00[EUR][1000 genomes]
rs4151440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151469	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4151498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151569	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151578	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4151610	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4151615	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4151624	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7325162	1.00[EUR][1000 genomes]
rs73490887	0.86[EUR][1000 genomes]
rs74074949	1.00[EUR][1000 genomes]
rs74074955	1.00[EUR][1000 genomes]
rs9331953	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9331968	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9331980	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9331999	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332014	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332031	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332037	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332049	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9332253	0.83[EUR][1000 genomes]
rs9332258	0.83[EUR][1000 genomes]
rs9332273	0.83[EUR][1000 genomes]
rs9332282	0.83[EUR][1000 genomes]
rs9332303	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48987600-49010400	Weak transcription	Psoas Muscle	Psoas
2	chr13:48990800-49011600	Weak transcription	Left Ventricle	heart
3	chr13:48990800-49030800	Weak transcription	Ovary	ovary
4	chr13:48991400-49010200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:48991400-49013200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:48991400-49018600	Weak transcription	Thymus	Thymus
7	chr13:48991400-49019200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:48991400-49030600	Weak transcription	Spleen	Spleen
9	chr13:48991600-49010800	Weak transcription	Fetal Stomach	stomach
10	chr13:48991800-49010000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr13:48991800-49018800	Weak transcription	Fetal Thymus	thymus
12	chr13:48994800-49018000	Weak transcription	Primary B cells from cord blood	blood
13	chr13:48996600-49010400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:48997800-49011200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr13:48999000-49024400	Weak transcription	Fetal Muscle Leg	muscle
16	chr13:49001400-49010600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:49001400-49022400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:49001400-49024600	Weak transcription	Fetal Intestine Small	intestine
19	chr13:49003000-49012600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr13:49003600-49011600	Weak transcription	Pancreas	Pancrea
21	chr13:49003600-49023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr13:49006000-49018000	Weak transcription	Dnd41	blood
23	chr13:49006400-49018800	Weak transcription	GM12878-XiMat	blood
24	chr13:49006600-49010400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr13:49006600-49010800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr13:49006600-49011400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr13:49006600-49011600	Weak transcription	Brain Anterior Caudate	brain
28	chr13:49006800-49010200	Weak transcription	Stomach Mucosa	stomach
29	chr13:49006800-49010400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr13:49006800-49010400	Weak transcription	Brain Substantia Nigra	brain
31	chr13:49006800-49010600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr13:49006800-49010600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr13:49006800-49010600	Weak transcription	HMEC	breast
34	chr13:49006800-49010800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr13:49006800-49010800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr13:49006800-49010800	Weak transcription	NHDF-Ad	bronchial
37	chr13:49006800-49010800	Weak transcription	NHLF	lung
38	chr13:49006800-49011000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:49006800-49011000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:49006800-49011000	Weak transcription	Colon Smooth Muscle	Colon
41	chr13:49006800-49011200	Weak transcription	HSMM	muscle
42	chr13:49006800-49011600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr13:49006800-49020200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr13:49006800-49020400	Weak transcription	HSMMtube	muscle
45	chr13:49006800-49020800	Weak transcription	Hela-S3	cervix
46	chr13:49006800-49030400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr13:49007000-49010200	Weak transcription	Adipose Nuclei	Adipose
48	chr13:49007000-49010200	Weak transcription	HUVEC	blood vessel
49	chr13:49007000-49011000	Weak transcription	Osteobl	bone
50	chr13:49007000-49011200	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links