Variant report

Variant	rs9332273
Chromosome Location	chr13:48827624-48827625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48825760..48827717-chr13:48828186..48830367,2	MCF-7	breast:
2	chr13:48806836..48808802-chr13:48825261..48827640,2	K562	blood:

Variant related genes	Relation type
ENSG00000136156	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4151420	0.83[EUR][1000 genomes]
rs4151421	0.83[EUR][1000 genomes]
rs4151424	0.83[EUR][1000 genomes]
rs4151425	0.83[EUR][1000 genomes]
rs4151426	0.83[EUR][1000 genomes]
rs4151430	0.83[EUR][1000 genomes]
rs4151433	0.83[EUR][1000 genomes]
rs4151436	0.83[EUR][1000 genomes]
rs4151440	0.83[EUR][1000 genomes]
rs4151445	0.83[EUR][1000 genomes]
rs4151463	0.83[EUR][1000 genomes]
rs4151469	0.83[EUR][1000 genomes]
rs4151475	0.83[EUR][1000 genomes]
rs4151480	0.83[EUR][1000 genomes]
rs4151498	0.83[EUR][1000 genomes]
rs4151505	0.83[EUR][1000 genomes]
rs4151529	0.83[EUR][1000 genomes]
rs4151536	0.83[EUR][1000 genomes]
rs4151555	0.83[EUR][1000 genomes]
rs4151560	0.83[EUR][1000 genomes]
rs4151564	0.83[EUR][1000 genomes]
rs4151567	0.83[EUR][1000 genomes]
rs4151578	0.83[EUR][1000 genomes]
rs4151610	0.83[EUR][1000 genomes]
rs4151615	0.83[EUR][1000 genomes]
rs4151624	0.83[EUR][1000 genomes]
rs9332253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48808400-48829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:48808400-48829200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:48808400-48843600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:48809600-48837400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:48809800-48829200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:48810400-48830200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:48810800-48841000	Weak transcription	Hela-S3	cervix
8	chr13:48811200-48843800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:48811400-48828200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:48811600-48829000	Weak transcription	Colonic Mucosa	Colon
11	chr13:48811600-48829600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:48811600-48835600	Weak transcription	Fetal Brain Male	brain
13	chr13:48811600-48836800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr13:48811800-48828000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:48811800-48828200	Weak transcription	Aorta	Aorta
16	chr13:48812200-48828200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr13:48812400-48827800	Weak transcription	HMEC	breast
18	chr13:48812400-48827800	Weak transcription	NH-A	brain
19	chr13:48812400-48828000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr13:48812400-48828200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr13:48812600-48827800	Weak transcription	Osteobl	bone
22	chr13:48813400-48829600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr13:48813600-48828200	Weak transcription	HSMM	muscle
24	chr13:48814000-48828200	Weak transcription	NHEK	skin
25	chr13:48814200-48827800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr13:48814200-48827800	Weak transcription	A549	lung
27	chr13:48814200-48828000	Weak transcription	Fetal Intestine Large	intestine
28	chr13:48814200-48828200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:48814600-48827800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:48815200-48827800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr13:48816400-48827800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr13:48817400-48828000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr13:48817600-48827800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr13:48818600-48828400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr13:48818600-48828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr13:48819200-48827800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr13:48820400-48827800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr13:48820600-48828000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr13:48822200-48828200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr13:48823000-48828200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr13:48823200-48832800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr13:48823400-48833200	Weak transcription	Small Intestine	intestine
43	chr13:48823600-48828000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr13:48824800-48828200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:48825200-48828400	Enhancers	Liver	Liver
46	chr13:48825200-48834000	Enhancers	Pancreatic Islets	Pancreatic Islet
47	chr13:48825200-48837000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr13:48825400-48827800	Weak transcription	NHDF-Ad	bronchial
49	chr13:48825400-48828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr13:48825400-48836800	Strong transcription	Primary B cells from peripheral blood	blood

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