Variant report

Variant	rs4151426
Chromosome Location	chr13:48880759-48880760
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:48876411-48880767	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:48877164..48879255-chr13:48879403..48881439,2	K562	blood:
2	chr13:48880616..48882681-chr13:48883191..48885287,2	MCF-7	breast:
3	chr13:48879143..48880782-chr13:48887073..48889128,2	K562	blood:

Variant related genes	Relation type
LINC00441	TF binding region
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs174858	1.00[CEU][hapmap]
rs198580	1.00[CEU][hapmap]
rs198582	1.00[CEU][hapmap]
rs198589	1.00[CEU][hapmap]
rs2156910	1.00[CEU][hapmap]
rs367438	1.00[CEU][hapmap]
rs4151420	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151421	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151424	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151440	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151445	1.00[EUR][1000 genomes]
rs4151463	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151469	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151475	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151480	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151484	0.86[EUR][1000 genomes]
rs4151498	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151505	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151529	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151536	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151555	1.00[EUR][1000 genomes]
rs4151560	1.00[EUR][1000 genomes]
rs4151564	1.00[EUR][1000 genomes]
rs4151567	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151569	0.86[EUR][1000 genomes]
rs4151578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151610	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4151615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449151	1.00[CEU][hapmap]
rs449268	1.00[CEU][hapmap]
rs7325162	1.00[EUR][1000 genomes]
rs7326934	1.00[CEU][hapmap]
rs73490887	0.86[EUR][1000 genomes]
rs9316386	1.00[CEU][hapmap]
rs9331953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331968	1.00[EUR][1000 genomes]
rs9331980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332031	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332037	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332049	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332253	0.83[EUR][1000 genomes]
rs9332258	0.83[EUR][1000 genomes]
rs9332273	0.83[EUR][1000 genomes]
rs9332280	1.00[CEU][hapmap]
rs9332282	0.83[EUR][1000 genomes]
rs9332303	1.00[CEU][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48878800-48890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:48879000-48880800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr13:48879000-48880800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr13:48879000-48882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:48879000-48891000	Weak transcription	Esophagus	oesophagus
6	chr13:48879400-48880800	Enhancers	Primary T cells from cord blood	blood
7	chr13:48879400-48880800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr13:48879400-48880800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr13:48879400-48880800	Enhancers	Brain Angular Gyrus	brain
10	chr13:48879400-48881200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:48879400-48883600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:48879400-48890000	Weak transcription	Fetal Brain Male	brain
13	chr13:48879400-48890000	Weak transcription	Fetal Intestine Large	intestine
14	chr13:48879400-48894200	Weak transcription	A549	lung
15	chr13:48879600-48880800	Enhancers	NHEK	skin
16	chr13:48879600-48881200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr13:48879600-48884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:48879600-48889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr13:48879800-48880800	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr13:48879800-48880800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr13:48879800-48880800	Enhancers	Small Intestine	intestine
22	chr13:48879800-48880800	Genic enhancers	Thymus	Thymus
23	chr13:48879800-48880800	Enhancers	Spleen	Spleen
24	chr13:48879800-48880800	Transcr. at gene 5' and 3'	Dnd41	blood
25	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:48880000-48880800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr13:48880000-48881000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:48880000-48881400	Weak transcription	HSMM	muscle
29	chr13:48880000-48886000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr13:48880000-48888000	Weak transcription	K562	blood
31	chr13:48880000-48889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr13:48880000-48892000	Weak transcription	HSMMtube	muscle
33	chr13:48880200-48880800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:48880200-48880800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr13:48880200-48880800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:48880200-48880800	Enhancers	Colon Smooth Muscle	Colon
37	chr13:48880200-48880800	Enhancers	NHDF-Ad	bronchial
38	chr13:48880200-48881200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:48880200-48881200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr13:48880200-48881200	Enhancers	HepG2	liver
41	chr13:48880200-48881400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr13:48880200-48881400	Active TSS	GM12878-XiMat	blood
43	chr13:48880200-48881600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr13:48880200-48881600	Weak transcription	Fetal Stomach	stomach
45	chr13:48880200-48882800	Strong transcription	Fetal Intestine Small	intestine
46	chr13:48880200-48886800	Weak transcription	Fetal Heart	heart
47	chr13:48880200-48888000	Weak transcription	Fetal Lung	lung
48	chr13:48880200-48889200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr13:48880200-48890600	Weak transcription	NHLF	lung
50	chr13:48880200-48891400	Weak transcription	Muscle Satellite Cultured Cells	--

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