Variant report

Variant	rs4151569
Chromosome Location	chr13:49013746-49013747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:49002533..49005304-chr13:49011624..49014276,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPAR6-2	chr13:49013745-49013948	NONHSAT033712
2	lnc-LPAR6-2	chr13:49013745-49013948	NONHSAT033715

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs4151420	0.86[EUR][1000 genomes]
rs4151421	0.86[EUR][1000 genomes]
rs4151424	0.86[EUR][1000 genomes]
rs4151425	0.86[EUR][1000 genomes]
rs4151426	0.86[EUR][1000 genomes]
rs4151430	0.86[EUR][1000 genomes]
rs4151433	0.86[EUR][1000 genomes]
rs4151436	0.86[EUR][1000 genomes]
rs4151440	0.86[EUR][1000 genomes]
rs4151445	0.86[EUR][1000 genomes]
rs4151463	0.86[EUR][1000 genomes]
rs4151469	0.86[EUR][1000 genomes]
rs4151475	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151480	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151484	1.00[AFR][1000 genomes]
rs4151498	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151505	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151529	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151536	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151555	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151560	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151564	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151567	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151578	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151610	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151615	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4151624	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7325162	0.86[EUR][1000 genomes]
rs74074949	0.86[EUR][1000 genomes]
rs74074955	0.86[EUR][1000 genomes]
rs9331953	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9331968	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9331980	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9331999	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9332014	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9332031	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9332037	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9332049	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48990800-49030800	Weak transcription	Ovary	ovary
2	chr13:48991400-49018600	Weak transcription	Thymus	Thymus
3	chr13:48991400-49019200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:48991400-49030600	Weak transcription	Spleen	Spleen
5	chr13:48991800-49018800	Weak transcription	Fetal Thymus	thymus
6	chr13:48994800-49018000	Weak transcription	Primary B cells from cord blood	blood
7	chr13:48999000-49024400	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:49001400-49022400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:49001400-49024600	Weak transcription	Fetal Intestine Small	intestine
10	chr13:49003600-49023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr13:49006000-49018000	Weak transcription	Dnd41	blood
12	chr13:49006400-49018800	Weak transcription	GM12878-XiMat	blood
13	chr13:49006800-49020200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:49006800-49020400	Weak transcription	HSMMtube	muscle
15	chr13:49006800-49020800	Weak transcription	Hela-S3	cervix
16	chr13:49006800-49030400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr13:49007000-49027600	Weak transcription	Primary T cells from cord blood	blood
18	chr13:49008000-49028600	Weak transcription	HepG2	liver
19	chr13:49008800-49030800	Weak transcription	Placenta	Placenta
20	chr13:49009000-49030600	Weak transcription	Gastric	stomach
21	chr13:49009000-49030600	Weak transcription	Lung	lung
22	chr13:49010800-49017800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr13:49010800-49017800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr13:49011200-49028800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr13:49011400-49017800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr13:49011400-49022800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr13:49011800-49017200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr13:49011800-49020400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:49011800-49023600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr13:49012000-49016600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr13:49012000-49016800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr13:49012000-49017400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:49012000-49018000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:49012000-49018000	Weak transcription	Fetal Stomach	stomach
35	chr13:49012000-49018600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr13:49012000-49019400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr13:49012000-49019800	Weak transcription	HUVEC	blood vessel
38	chr13:49012000-49020200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr13:49012000-49020200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr13:49012000-49020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:49012000-49020400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr13:49012000-49020400	Weak transcription	NHLF	lung
43	chr13:49012000-49020400	Weak transcription	Osteobl	bone
44	chr13:49012000-49020600	Weak transcription	HSMM	muscle
45	chr13:49012000-49020800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:49012000-49022400	Weak transcription	Brain Anterior Caudate	brain
47	chr13:49012000-49022800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:49012000-49023400	Weak transcription	Small Intestine	intestine
49	chr13:49012000-49027400	Weak transcription	Left Ventricle	heart
50	chr13:49012000-49028800	Weak transcription	Pancreas	Pancrea

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