Variant report

Variant	rs4151425
Chromosome Location	chr13:48880557-48880558
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr13:48876411-48880767	GM12891	blood:	n/a	n/a
2	WRNIP1	chr13:48880401-48880682	GM12878	blood:	n/a	n/a
3	CHD1	chr13:48880539-48880651	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48877164..48879255-chr13:48879403..48881439,2	K562	blood:
2	chr13:48879143..48880782-chr13:48887073..48889128,2	K562	blood:

Variant related genes	Relation type
LINC00441	TF binding region
ENSG00000139687	Chromatin interaction
ENSG00000231473	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs4151420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151440	1.00[EUR][1000 genomes]
rs4151445	1.00[EUR][1000 genomes]
rs4151463	1.00[EUR][1000 genomes]
rs4151469	1.00[EUR][1000 genomes]
rs4151475	1.00[EUR][1000 genomes]
rs4151480	1.00[EUR][1000 genomes]
rs4151484	0.86[EUR][1000 genomes]
rs4151498	1.00[EUR][1000 genomes]
rs4151505	1.00[EUR][1000 genomes]
rs4151529	1.00[EUR][1000 genomes]
rs4151536	1.00[EUR][1000 genomes]
rs4151555	1.00[EUR][1000 genomes]
rs4151560	1.00[EUR][1000 genomes]
rs4151564	1.00[EUR][1000 genomes]
rs4151567	1.00[EUR][1000 genomes]
rs4151569	0.86[EUR][1000 genomes]
rs4151578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151610	1.00[EUR][1000 genomes]
rs4151615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4151624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325162	1.00[EUR][1000 genomes]
rs73490887	0.86[EUR][1000 genomes]
rs9331953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331968	1.00[EUR][1000 genomes]
rs9331980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9331999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332253	0.83[EUR][1000 genomes]
rs9332258	0.83[EUR][1000 genomes]
rs9332273	0.83[EUR][1000 genomes]
rs9332282	0.83[EUR][1000 genomes]
rs9332303	0.83[EUR][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48878800-48890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:48879000-48880600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr13:48879000-48880800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
4	chr13:48879000-48880800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr13:48879000-48882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:48879000-48891000	Weak transcription	Esophagus	oesophagus
7	chr13:48879200-48880600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr13:48879200-48880600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:48879200-48880600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr13:48879200-48880600	Active TSS	Rectal Smooth Muscle	rectum
11	chr13:48879400-48880600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr13:48879400-48880600	Enhancers	Brain Hippocampus Middle	brain
13	chr13:48879400-48880800	Enhancers	Primary T cells from cord blood	blood
14	chr13:48879400-48880800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr13:48879400-48880800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:48879400-48880800	Enhancers	Brain Angular Gyrus	brain
17	chr13:48879400-48881200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr13:48879400-48883600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr13:48879400-48890000	Weak transcription	Fetal Brain Male	brain
20	chr13:48879400-48890000	Weak transcription	Fetal Intestine Large	intestine
21	chr13:48879400-48894200	Weak transcription	A549	lung
22	chr13:48879600-48880600	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
23	chr13:48879600-48880600	Enhancers	Ovary	ovary
24	chr13:48879600-48880600	Enhancers	Psoas Muscle	Psoas
25	chr13:48879600-48880600	Enhancers	Right Ventricle	heart
26	chr13:48879600-48880600	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr13:48879600-48880800	Enhancers	NHEK	skin
28	chr13:48879600-48881200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr13:48879600-48884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:48879600-48889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:48879800-48880600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr13:48879800-48880600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr13:48879800-48880600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr13:48879800-48880600	Enhancers	Adipose Nuclei	Adipose
35	chr13:48879800-48880600	Enhancers	Pancreas	Pancrea
36	chr13:48879800-48880800	Genic enhancers	Primary monocytes fromperipheralblood	blood
37	chr13:48879800-48880800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr13:48879800-48880800	Enhancers	Small Intestine	intestine
39	chr13:48879800-48880800	Genic enhancers	Thymus	Thymus
40	chr13:48879800-48880800	Enhancers	Spleen	Spleen
41	chr13:48879800-48880800	Transcr. at gene 5' and 3'	Dnd41	blood
42	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr13:48880000-48880600	Enhancers	Stomach Smooth Muscle	stomach
44	chr13:48880000-48880600	Enhancers	HUVEC	blood vessel
45	chr13:48880000-48880600	Enhancers	Osteobl	bone
46	chr13:48880000-48880800	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr13:48880000-48881000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:48880000-48881400	Weak transcription	HSMM	muscle
49	chr13:48880000-48886000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr13:48880000-48888000	Weak transcription	K562	blood

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