Variant report

Variant	rs9332282
Chromosome Location	chr13:48829659-48829660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48823943..48826005-chr13:48829324..48832126,2	MCF-7	breast:
2	chr13:48807403..48809674-chr13:48828409..48830579,2	K562	blood:
3	chr13:48825760..48827717-chr13:48828186..48830367,2	MCF-7	breast:
4	chr13:48818705..48820484-chr13:48828248..48829795,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs4151420	0.83[EUR][1000 genomes]
rs4151421	0.83[EUR][1000 genomes]
rs4151424	0.83[EUR][1000 genomes]
rs4151425	0.83[EUR][1000 genomes]
rs4151426	0.83[EUR][1000 genomes]
rs4151430	0.83[EUR][1000 genomes]
rs4151433	0.83[EUR][1000 genomes]
rs4151436	0.83[EUR][1000 genomes]
rs4151440	0.83[EUR][1000 genomes]
rs4151445	0.83[EUR][1000 genomes]
rs4151463	0.83[EUR][1000 genomes]
rs4151469	0.83[EUR][1000 genomes]
rs4151475	0.83[EUR][1000 genomes]
rs4151480	0.83[EUR][1000 genomes]
rs4151498	0.83[EUR][1000 genomes]
rs4151505	0.83[EUR][1000 genomes]
rs4151529	0.83[EUR][1000 genomes]
rs4151536	0.83[EUR][1000 genomes]
rs4151555	0.83[EUR][1000 genomes]
rs4151560	0.83[EUR][1000 genomes]
rs4151564	0.83[EUR][1000 genomes]
rs4151567	0.83[EUR][1000 genomes]
rs4151578	0.83[EUR][1000 genomes]
rs4151610	0.83[EUR][1000 genomes]
rs4151615	0.83[EUR][1000 genomes]
rs4151624	0.83[EUR][1000 genomes]
rs9332253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332273	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541766	chr13:48703229-48857639	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48808400-48843600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:48809600-48837400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:48810400-48830200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:48810800-48841000	Weak transcription	Hela-S3	cervix
5	chr13:48811200-48843800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr13:48811600-48835600	Weak transcription	Fetal Brain Male	brain
7	chr13:48811600-48836800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:48823200-48832800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:48823400-48833200	Weak transcription	Small Intestine	intestine
10	chr13:48825200-48834000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr13:48825200-48837000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr13:48825400-48836800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr13:48825400-48841200	Strong transcription	Fetal Thymus	thymus
14	chr13:48825400-48844400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:48825800-48837400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:48826200-48840000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:48826400-48830200	Weak transcription	Brain Substantia Nigra	brain
18	chr13:48826400-48841200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:48826600-48833400	Weak transcription	Psoas Muscle	Psoas
20	chr13:48826600-48837000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr13:48826800-48832200	Weak transcription	NHLF	lung
22	chr13:48826800-48837400	Weak transcription	Right Atrium	heart
23	chr13:48826800-48842000	Weak transcription	K562	blood
24	chr13:48827200-48830200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr13:48827400-48833200	Strong transcription	Primary T cells from cord blood	blood
26	chr13:48827400-48836600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:48827400-48836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr13:48827400-48840200	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr13:48827600-48831200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
30	chr13:48827600-48831200	Strong transcription	Thymus	Thymus
31	chr13:48827600-48832200	Strong transcription	Fetal Kidney	kidney
32	chr13:48827600-48832600	Strong transcription	HUVEC	blood vessel
33	chr13:48827600-48834400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:48827600-48837000	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr13:48827600-48838800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:48827600-48839000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr13:48827600-48839800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr13:48827600-48839800	Strong transcription	Dnd41	blood
39	chr13:48827600-48841000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr13:48827600-48843600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr13:48827800-48831200	Strong transcription	HSMMtube	muscle
42	chr13:48827800-48831200	Strong transcription	NH-A	brain
43	chr13:48827800-48832800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:48827800-48833800	Strong transcription	HMEC	breast
45	chr13:48827800-48835000	Strong transcription	Fetal Muscle Trunk	muscle
46	chr13:48827800-48836600	Strong transcription	Primary B cells from cord blood	blood
47	chr13:48827800-48836600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr13:48827800-48837200	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr13:48827800-48837600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr13:48827800-48838200	Strong transcription	Primary hematopoietic stem cells	blood

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