Variant report

Variant	rs7325162
Chromosome Location	chr13:49105766-49105767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:49105312..49106900-chr13:49113736..49116224,2	MCF-7	breast:
2	chr13:49102666..49106800-chr13:49108921..49111572,3	MCF-7	breast:
3	chr13:49096194..49098388-chr13:49103789..49106979,3	MCF-7	breast:
4	chr13:49088221..49089957-chr13:49104157..49106836,2	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs4151420	1.00[EUR][1000 genomes]
rs4151421	1.00[EUR][1000 genomes]
rs4151424	1.00[EUR][1000 genomes]
rs4151425	1.00[EUR][1000 genomes]
rs4151426	1.00[EUR][1000 genomes]
rs4151430	1.00[EUR][1000 genomes]
rs4151433	1.00[EUR][1000 genomes]
rs4151436	1.00[EUR][1000 genomes]
rs4151440	1.00[EUR][1000 genomes]
rs4151445	1.00[EUR][1000 genomes]
rs4151463	1.00[EUR][1000 genomes]
rs4151469	1.00[EUR][1000 genomes]
rs4151475	1.00[EUR][1000 genomes]
rs4151480	1.00[EUR][1000 genomes]
rs4151484	0.86[EUR][1000 genomes]
rs4151498	1.00[EUR][1000 genomes]
rs4151505	1.00[EUR][1000 genomes]
rs4151529	1.00[EUR][1000 genomes]
rs4151536	1.00[EUR][1000 genomes]
rs4151555	1.00[EUR][1000 genomes]
rs4151560	1.00[EUR][1000 genomes]
rs4151564	1.00[EUR][1000 genomes]
rs4151567	1.00[EUR][1000 genomes]
rs4151569	0.86[EUR][1000 genomes]
rs4151578	1.00[EUR][1000 genomes]
rs4151610	1.00[EUR][1000 genomes]
rs4151615	1.00[EUR][1000 genomes]
rs4151624	1.00[EUR][1000 genomes]
rs6561450	0.87[AFR][1000 genomes]
rs6561451	0.87[AFR][1000 genomes]
rs6561454	0.87[AFR][1000 genomes]
rs7317090	0.87[AFR][1000 genomes]
rs7321483	0.82[AFR][1000 genomes]
rs7322265	0.87[AFR][1000 genomes]
rs7322855	0.87[AFR][1000 genomes]
rs7332828	0.87[AFR][1000 genomes]
rs7334590	0.87[AFR][1000 genomes]
rs73490887	0.86[EUR][1000 genomes]
rs74074949	1.00[EUR][1000 genomes]
rs74074955	1.00[EUR][1000 genomes]
rs7984753	0.87[AFR][1000 genomes]
rs7987986	0.95[AFR][1000 genomes]
rs7988909	0.82[AFR][1000 genomes]
rs7989808	0.82[AFR][1000 genomes]
rs9331953	1.00[EUR][1000 genomes]
rs9331963	0.87[AFR][1000 genomes]
rs9331967	0.87[AFR][1000 genomes]
rs9331968	1.00[EUR][1000 genomes]
rs9331980	1.00[EUR][1000 genomes]
rs9331992	0.87[AFR][1000 genomes]
rs9331999	1.00[EUR][1000 genomes]
rs9332004	0.87[AFR][1000 genomes]
rs9332006	0.87[AFR][1000 genomes]
rs9332014	1.00[EUR][1000 genomes]
rs9332020	0.82[AFR][1000 genomes]
rs9332023	0.82[AFR][1000 genomes]
rs9332024	0.82[AFR][1000 genomes]
rs9332027	0.82[AFR][1000 genomes]
rs9332031	1.00[EUR][1000 genomes]
rs9332037	1.00[EUR][1000 genomes]
rs9332039	0.82[AFR][1000 genomes]
rs9332041	0.82[AFR][1000 genomes]
rs9332047	0.82[AFR][1000 genomes]
rs9332049	1.00[EUR][1000 genomes]
rs9332074	0.82[AFR][1000 genomes]
rs9332077	0.82[AFR][1000 genomes]
rs9332081	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832602	chr13:49003159-49167781	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1041275	chr13:49045566-49242357	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv541769	chr13:49045566-49242357	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv832604	chr13:49061081-49281807	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49071800-49105800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr13:49086400-49106200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:49089200-49105800	Weak transcription	Ovary	ovary
4	chr13:49101600-49105800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:49101800-49106600	Flanking Active TSS	GM12878-XiMat	blood
6	chr13:49103600-49105800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:49104400-49105800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr13:49104800-49105800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr13:49105000-49105800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr13:49105000-49106000	Enhancers	Primary B cells from cord blood	blood
11	chr13:49105000-49106000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr13:49105000-49106200	Enhancers	Primary B cells from peripheral blood	blood
13	chr13:49105200-49105800	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr13:49105200-49106400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr13:49105400-49105800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr13:49105400-49105800	Enhancers	Fetal Muscle Leg	muscle
17	chr13:49105400-49106000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr13:49105400-49106000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr13:49105400-49107800	Active TSS	Right Atrium	heart
20	chr13:49105600-49105800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr13:49105600-49105800	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr13:49105600-49105800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr13:49105600-49105800	Enhancers	Primary T cells from cord blood	blood
24	chr13:49105600-49105800	Enhancers	Primary hematopoietic stem cells	blood
25	chr13:49105600-49105800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr13:49105600-49105800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:49105600-49105800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:49105600-49105800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr13:49105600-49105800	Flanking Active TSS	Aorta	Aorta
30	chr13:49105600-49105800	Enhancers	Brain Angular Gyrus	brain
31	chr13:49105600-49105800	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr13:49105600-49105800	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr13:49105600-49105800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr13:49105600-49105800	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr13:49105600-49105800	Enhancers	Esophagus	oesophagus
36	chr13:49105600-49105800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr13:49105600-49105800	Active TSS	Fetal Brain Male	brain
38	chr13:49105600-49105800	Enhancers	Fetal Heart	heart
39	chr13:49105600-49105800	Enhancers	Fetal Intestine Large	intestine
40	chr13:49105600-49105800	Flanking Active TSS	Fetal Kidney	kidney
41	chr13:49105600-49105800	Flanking Active TSS	Fetal Lung	lung
42	chr13:49105600-49105800	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr13:49105600-49105800	Enhancers	Placenta	Placenta
44	chr13:49105600-49105800	Enhancers	Fetal Stomach	stomach
45	chr13:49105600-49105800	Enhancers	Fetal Thymus	thymus
46	chr13:49105600-49105800	Flanking Active TSS	Left Ventricle	heart
47	chr13:49105600-49105800	Flanking Active TSS	Pancreas	Pancrea
48	chr13:49105600-49105800	Enhancers	Psoas Muscle	Psoas
49	chr13:49105600-49105800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
50	chr13:49105600-49105800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links