Variant report

Variant	rs2854356
Chromosome Location	chr13:48883015-48883016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:48876952..48879921-chr13:48882971..48886926,4	MCF-7	breast:
2	chr13:48875864..48881455-chr13:48881807..48887106,10	K562	blood:

Variant related genes	Relation type
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11840676	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171989	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs185587	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs198559	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198565	0.92[EUR][1000 genomes]
rs198566	0.92[EUR][1000 genomes]
rs198567	0.92[EUR][1000 genomes]
rs198572	0.92[EUR][1000 genomes]
rs198573	0.92[EUR][1000 genomes]
rs198583	0.92[EUR][1000 genomes]
rs198587	0.92[EUR][1000 genomes]
rs198600	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198601	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198613	0.92[EUR][1000 genomes]
rs198616	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198617	0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198618	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198626	0.85[AMR][1000 genomes]
rs198628	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198632	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198636	0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2245534	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265777	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2406932	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2515668	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804082	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804084	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804085	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804086	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804087	0.92[EUR][1000 genomes]
rs2804088	0.92[EUR][1000 genomes]
rs2804089	0.92[EUR][1000 genomes]
rs2804091	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804092	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854350	0.84[AFR][1000 genomes]
rs2854352	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854354	0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2854361	0.92[YRI][hapmap]
rs2854363	0.92[EUR][1000 genomes]
rs2854364	0.92[EUR][1000 genomes]
rs2854365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2984828	0.92[EUR][1000 genomes]
rs3020646	0.92[EUR][1000 genomes]
rs411661	0.84[EUR][1000 genomes]
rs411862	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4151590	0.84[EUR][1000 genomes]
rs416156	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs428431	0.92[EUR][1000 genomes]
rs4625624	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547747	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61507973	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318012	1.00[EUR][1000 genomes]
rs7990103	0.92[EUR][1000 genomes]
rs8001351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285166	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316371	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332248	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332281	1.00[EUR][1000 genomes]
rs9562817	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9591153	1.00[EUR][1000 genomes]
rs9591154	1.00[EUR][1000 genomes]
rs9591155	1.00[EUR][1000 genomes]
rs9591163	0.92[EUR][1000 genomes]
rs9595872	0.83[EUR][1000 genomes]
rs9595894	0.92[EUR][1000 genomes]
rs9595909	0.92[EUR][1000 genomes]
rs9595910	0.92[EUR][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48878800-48890800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:48879000-48891000	Weak transcription	Esophagus	oesophagus
3	chr13:48879400-48883600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:48879400-48890000	Weak transcription	Fetal Brain Male	brain
5	chr13:48879400-48890000	Weak transcription	Fetal Intestine Large	intestine
6	chr13:48879400-48894200	Weak transcription	A549	lung
7	chr13:48879600-48884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr13:48879600-48889400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:48879800-48892400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr13:48880000-48886000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr13:48880000-48888000	Weak transcription	K562	blood
12	chr13:48880000-48889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr13:48880000-48892000	Weak transcription	HSMMtube	muscle
14	chr13:48880200-48886800	Weak transcription	Fetal Heart	heart
15	chr13:48880200-48888000	Weak transcription	Fetal Lung	lung
16	chr13:48880200-48889200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:48880200-48890600	Weak transcription	NHLF	lung
18	chr13:48880200-48891400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:48880200-48892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:48880200-48892200	Weak transcription	Fetal Kidney	kidney
21	chr13:48880200-48892200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr13:48880200-48892600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr13:48880200-48892600	Weak transcription	NH-A	brain
24	chr13:48880200-48893800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr13:48880200-48894400	Weak transcription	Brain Anterior Caudate	brain
26	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
27	chr13:48880400-48889600	Weak transcription	Fetal Brain Female	brain
28	chr13:48880400-48890200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:48880400-48890400	Weak transcription	Gastric	stomach
30	chr13:48880400-48890400	Weak transcription	Lung	lung
31	chr13:48880400-48890800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr13:48880400-48891000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr13:48880400-48891200	Weak transcription	Placenta	Placenta
34	chr13:48880400-48892400	Weak transcription	HMEC	breast
35	chr13:48880400-48892600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr13:48880600-48884000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr13:48880600-48884000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr13:48880600-48884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr13:48880600-48890200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr13:48880600-48890200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:48880600-48890400	Weak transcription	Left Ventricle	heart
42	chr13:48880600-48890400	Weak transcription	Right Ventricle	heart
43	chr13:48880600-48891000	Weak transcription	Pancreas	Pancrea
44	chr13:48880600-48891000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr13:48880600-48891800	Weak transcription	HUVEC	blood vessel
46	chr13:48880600-48892200	Weak transcription	Brain Hippocampus Middle	brain
47	chr13:48880600-48892200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr13:48880600-48892400	Weak transcription	Ovary	ovary
49	chr13:48880600-48894600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas

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