Variant report

Variant	rs2515668
Chromosome Location	chr13:48895670-48895671
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:48890081..48892868-chr13:48894864..48897865,3	K562	blood:
2	chr13:48877340..48879223-chr13:48894688..48896707,2	MCF-7	breast:
3	chr13:48890081..48892868-chr13:48895094..48897865,2	K562	blood:

Variant related genes	Relation type
ENSG00000231473	Chromatin interaction
ENSG00000139687	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11840676	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171989	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs185587	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs198559	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198565	0.92[EUR][1000 genomes]
rs198566	0.92[EUR][1000 genomes]
rs198567	0.92[EUR][1000 genomes]
rs198572	0.92[EUR][1000 genomes]
rs198573	0.92[EUR][1000 genomes]
rs198583	0.92[EUR][1000 genomes]
rs198587	0.92[EUR][1000 genomes]
rs198600	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198601	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198613	0.92[EUR][1000 genomes]
rs198616	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198617	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198618	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198626	0.85[AMR][1000 genomes]
rs198628	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198632	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198636	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2245534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265777	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2406932	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804082	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804084	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804085	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804086	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804087	0.92[EUR][1000 genomes]
rs2804088	0.92[EUR][1000 genomes]
rs2804089	0.92[EUR][1000 genomes]
rs2804091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804092	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854350	0.82[AFR][1000 genomes]
rs2854352	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854354	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2854356	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854363	0.92[EUR][1000 genomes]
rs2854364	0.92[EUR][1000 genomes]
rs2854365	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2984828	0.92[EUR][1000 genomes]
rs3020646	0.92[EUR][1000 genomes]
rs411661	0.84[EUR][1000 genomes]
rs411862	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4151590	0.84[EUR][1000 genomes]
rs416156	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs428431	0.92[EUR][1000 genomes]
rs4625624	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547747	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61507973	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318012	1.00[EUR][1000 genomes]
rs7990103	0.92[EUR][1000 genomes]
rs8001351	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285166	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316371	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332248	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332281	1.00[EUR][1000 genomes]
rs9562817	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9591153	1.00[EUR][1000 genomes]
rs9591154	1.00[EUR][1000 genomes]
rs9591155	1.00[EUR][1000 genomes]
rs9591163	0.92[EUR][1000 genomes]
rs9595872	0.83[EUR][1000 genomes]
rs9595894	0.92[EUR][1000 genomes]
rs9595909	0.92[EUR][1000 genomes]
rs9595910	0.92[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48880200-48913200	Weak transcription	Aorta	Aorta
2	chr13:48880600-48924600	Weak transcription	Psoas Muscle	Psoas
3	chr13:48880800-48896200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:48887000-48896200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr13:48890200-48896000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
6	chr13:48890800-48896800	ZNF genes & repeats	Dnd41	blood
7	chr13:48891000-48896800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr13:48891200-48896200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr13:48891400-48896000	ZNF genes & repeats	Thymus	Thymus
10	chr13:48891600-48896000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr13:48891800-48896000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr13:48892200-48896000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr13:48892200-48897000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:48892400-48895800	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr13:48892400-48896000	Active TSS	Rectal Mucosa Donor 31	rectum
16	chr13:48892600-48927800	Weak transcription	HUVEC	blood vessel
17	chr13:48892800-48895800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr13:48892800-48895800	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr13:48893800-48895800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr13:48894200-48895800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:48894200-48896000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:48894200-48896000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr13:48894400-48895800	Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr13:48894400-48895800	Active TSS	Brain Anterior Caudate	brain
25	chr13:48894400-48896000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:48894400-48896200	Active TSS	NHEK	skin
27	chr13:48894400-48906400	Weak transcription	Pancreas	Pancrea
28	chr13:48894400-48913800	Weak transcription	HSMM	muscle
29	chr13:48894600-48895800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr13:48894600-48895800	Weak transcription	NHLF	lung
31	chr13:48894600-48896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:48894600-48896000	Active TSS	Primary T cells from cord blood	blood
33	chr13:48894600-48896000	Active TSS	Adipose Nuclei	Adipose
34	chr13:48894600-48896000	Active TSS	Colonic Mucosa	Colon
35	chr13:48894600-48896000	Active TSS	Duodenum Mucosa	Duodenum
36	chr13:48894600-48896600	Weak transcription	Osteobl	bone
37	chr13:48894600-48919200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr13:48894800-48896200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr13:48894800-48907600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr13:48894800-48913200	Weak transcription	Lung	lung
41	chr13:48895000-48895800	Active TSS	Right Atrium	heart
42	chr13:48895000-48896000	Bivalent/Poised TSS	Fetal Lung	lung
43	chr13:48895000-48896200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr13:48895000-48896200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:48895000-48896200	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr13:48895200-48895800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr13:48895200-48895800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:48895200-48895800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr13:48895200-48895800	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr13:48895200-48895800	Bivalent/Poised TSS	Fetal Stomach	stomach

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