The 2.0 version of rSNPBase

Variant report

Variant rs416156
Chromosome Location chr13:48949062-48949063
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48909000-48972200 Weak transcription NHEK skin
2 chr13:48912200-48968200 Weak transcription Brain Cingulate Gyrus brain
3 chr13:48914000-48965800 Weak transcription Lung lung
4 chr13:48914800-48972000 Weak transcription NHLF lung
5 chr13:48916800-48985400 Weak transcription Colonic Mucosa Colon
6 chr13:48918000-48954400 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr13:48918600-48967200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr13:48920200-48974400 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr13:48921600-48972000 Weak transcription Stomach Mucosa stomach
10 chr13:48925000-48962800 Weak transcription Brain Inferior Temporal Lobe brain
11 chr13:48925200-48974800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr13:48925400-48976400 Weak transcription Ovary ovary
13 chr13:48925600-48968000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr13:48926200-48949200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr13:48926200-48954600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr13:48926800-48972000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr13:48928200-48954400 Weak transcription Primary T regulatory cells fromperipheralblood blood
18 chr13:48928200-48954600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
19 chr13:48928200-48971800 Weak transcription A549 lung
20 chr13:48928400-48952800 Weak transcription Fetal Heart heart
21 chr13:48928400-48963800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr13:48929800-48968400 Weak transcription Esophagus oesophagus
23 chr13:48932600-48957600 Weak transcription HUES64 Cell Line embryonic stem cell
24 chr13:48932800-48957400 Weak transcription Brain Substantia Nigra brain
25 chr13:48933200-48954400 Weak transcription Colon Smooth Muscle Colon
26 chr13:48933400-48974000 Weak transcription Rectal Smooth Muscle rectum
27 chr13:48934600-48984200 Weak transcription Right Ventricle heart
28 chr13:48935400-48968200 Weak transcription Spleen Spleen
29 chr13:48936000-48974600 Weak transcription Primary T helper naive cells fromperipheralblood blood
30 chr13:48936200-48968200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr13:48936400-48973200 Weak transcription Hela-S3 cervix
32 chr13:48937800-48964000 Weak transcription Fetal Intestine Small intestine
33 chr13:48938000-48949200 Weak transcription Placenta Placenta
34 chr13:48938200-48955400 Weak transcription Primary hematopoietic stem cells blood
35 chr13:48939800-48954400 Weak transcription Rectal Mucosa Donor 29 rectum
36 chr13:48941800-48973200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr13:48942400-48967200 Weak transcription Brain Germinal Matrix brain
38 chr13:48943000-48962000 Weak transcription Fetal Brain Female brain
39 chr13:48943000-48970800 Weak transcription Pancreas Pancrea
40 chr13:48943200-48950000 Strong transcription Primary B cells from cord blood blood
41 chr13:48943200-48951400 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr13:48943200-48957200 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr13:48943600-48984200 Weak transcription Brain Angular Gyrus brain
44 chr13:48944000-48974400 Weak transcription Brain Anterior Caudate brain
45 chr13:48944200-48973800 Weak transcription Primary T helper naive cells from peripheral blood blood
46 chr13:48944600-48965600 Weak transcription Aorta Aorta
47 chr13:48944600-48983400 Weak transcription Psoas Muscle Psoas
48 chr13:48944800-48954400 Weak transcription HMEC breast
49 chr13:48945000-48966000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
50 chr13:48945000-48972000 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015