Variant report

Variant	rs2406932
Chromosome Location	chr13:48873835-48873836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr13:48873737-48874190	HL-60	blood:	n/a	n/a
2	SPI1	chr13:48873815-48874036	GM12891	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:46958894..46960969-chr13:48873345..48874991,2	MCF-7	breast:
2	chr13:48873275..48875099-chr13:48896291..48897814,2	K562	blood:
3	chr13:48871999..48875028-chr13:48875191..48877876,3	K562	blood:
4	chr13:48865268..48867558-chr13:48872289..48875605,4	K562	blood:
5	chr13:48806093..48808734-chr13:48872221..48873885,2	K562	blood:
6	chr13:48867552..48869421-chr13:48873308..48875725,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RB1-1	chr13:48873035-48874422	NONHSAT033706

No data

Variant related genes	Relation type
RB1	TF binding region
ENSG00000136156	Chromatin interaction
ENSG00000231473	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11840676	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171989	0.92[EUR][1000 genomes]
rs185587	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs198559	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198565	0.92[EUR][1000 genomes]
rs198566	0.92[EUR][1000 genomes]
rs198567	0.92[EUR][1000 genomes]
rs198572	0.92[EUR][1000 genomes]
rs198573	0.92[EUR][1000 genomes]
rs198583	0.92[EUR][1000 genomes]
rs198587	0.92[EUR][1000 genomes]
rs198600	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198601	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198613	0.92[EUR][1000 genomes]
rs198616	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198617	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198618	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198628	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198632	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs198636	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2245534	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2265777	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2515668	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804082	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804084	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804085	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804086	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2804087	0.92[EUR][1000 genomes]
rs2804088	0.92[EUR][1000 genomes]
rs2804089	0.92[EUR][1000 genomes]
rs2804091	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2804092	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854352	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854356	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2854363	0.92[EUR][1000 genomes]
rs2854364	0.92[EUR][1000 genomes]
rs2854365	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2984828	0.92[EUR][1000 genomes]
rs3020646	0.92[EUR][1000 genomes]
rs411661	0.84[EUR][1000 genomes]
rs411862	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4151590	0.84[EUR][1000 genomes]
rs416156	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs428431	0.92[EUR][1000 genomes]
rs4625624	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs547747	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61507973	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318012	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7990103	0.92[EUR][1000 genomes]
rs8001351	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285166	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316371	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332248	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332281	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9562817	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9591153	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591154	1.00[EUR][1000 genomes]
rs9591155	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9591163	0.92[EUR][1000 genomes]
rs9595872	0.83[EUR][1000 genomes]
rs9595894	0.92[EUR][1000 genomes]
rs9595909	0.92[EUR][1000 genomes]
rs9595910	0.92[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48844400-48877200	Weak transcription	Aorta	Aorta
2	chr13:48863000-48876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:48866200-48876800	Weak transcription	Pancreas	Pancrea
4	chr13:48866200-48877200	Weak transcription	Left Ventricle	heart
5	chr13:48866600-48876600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:48868000-48876800	Weak transcription	Stomach Mucosa	stomach
7	chr13:48870200-48877000	Weak transcription	HSMMtube	muscle
8	chr13:48871000-48877000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr13:48871200-48877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:48871400-48877000	Weak transcription	Primary B cells from cord blood	blood
11	chr13:48871600-48876600	Weak transcription	Brain Substantia Nigra	brain
12	chr13:48871600-48876800	Weak transcription	HepG2	liver
13	chr13:48871800-48876400	Weak transcription	K562	blood
14	chr13:48871800-48876800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:48871800-48877200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr13:48872000-48876800	Weak transcription	Thymus	Thymus
17	chr13:48872200-48876000	Weak transcription	Fetal Thymus	thymus
18	chr13:48872800-48876200	Weak transcription	Dnd41	blood
19	chr13:48873200-48876600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:48873400-48876800	Weak transcription	Primary T cells from cord blood	blood
21	chr13:48873400-48876800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr13:48873600-48874200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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