The 2.0 version of rSNPBase

Variant report

Variant rs2854350
Chromosome Location chr13:48894924-48894925
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:48880200-48913200 Weak transcription Aorta Aorta
2 chr13:48880600-48924600 Weak transcription Psoas Muscle Psoas
3 chr13:48880800-48895200 Weak transcription Small Intestine intestine
4 chr13:48880800-48895600 Weak transcription Hela-S3 cervix
5 chr13:48880800-48896200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
6 chr13:48881200-48895600 Weak transcription HepG2 liver
7 chr13:48887000-48896200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr13:48890200-48895000 ZNF genes & repeats Fetal Stomach stomach
9 chr13:48890200-48896000 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
10 chr13:48890600-48895000 Weak transcription Right Atrium heart
11 chr13:48890600-48895400 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
12 chr13:48890800-48896800 ZNF genes & repeats Dnd41 blood
13 chr13:48891000-48895000 ZNF genes & repeats Brain Germinal Matrix brain
14 chr13:48891000-48895400 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
15 chr13:48891000-48896800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
16 chr13:48891200-48896200 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
17 chr13:48891400-48896000 ZNF genes & repeats Thymus Thymus
18 chr13:48891600-48896000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin01 Skin
19 chr13:48891800-48896000 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr13:48892000-48895200 Enhancers Fetal Heart heart
21 chr13:48892000-48895200 Strong transcription HSMMtube muscle
22 chr13:48892200-48895400 Active TSS Rectal Smooth Muscle rectum
23 chr13:48892200-48895400 Flanking Bivalent TSS/Enh Monocytes-CD14+_RO01746 blood
24 chr13:48892200-48896000 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr13:48892200-48897000 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
26 chr13:48892400-48895000 Bivalent Enhancer Fetal Brain Male brain
27 chr13:48892400-48895200 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
28 chr13:48892400-48895400 ZNF genes & repeats HMEC breast
29 chr13:48892400-48895800 Active TSS Rectal Mucosa Donor 29 rectum
30 chr13:48892400-48896000 Active TSS Rectal Mucosa Donor 31 rectum
31 chr13:48892600-48895400 Active TSS Primary T helper naive cells from peripheral blood blood
32 chr13:48892600-48895400 ZNF genes & repeats Fetal Intestine Small intestine
33 chr13:48892600-48927800 Weak transcription HUVEC blood vessel
34 chr13:48892800-48895000 Active TSS Primary T killer naive cells fromperipheralblood blood
35 chr13:48892800-48895200 Active TSS Primary T killer memory cells from peripheral blood blood
36 chr13:48892800-48895200 ZNF genes & repeats Fetal Muscle Leg muscle
37 chr13:48892800-48895800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
38 chr13:48892800-48895800 Active TSS Primary T helper cells PMA-I stimulated --
39 chr13:48893000-48895000 Active TSS Primary T helper memory cells from peripheral blood 2 blood
40 chr13:48893000-48895400 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr13:48893200-48895200 Weak transcription Fetal Kidney kidney
42 chr13:48893200-48895200 Weak transcription Ovary ovary
43 chr13:48893200-48895400 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr13:48893200-48895600 Weak transcription Brain Cingulate Gyrus brain
45 chr13:48893400-48895000 Enhancers Placenta Amnion Placenta Amnion
46 chr13:48893400-48895200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
47 chr13:48893400-48895200 Weak transcription Brain Hippocampus Middle brain
48 chr13:48893600-48895200 Genic enhancers Primary B cells from peripheral blood blood
49 chr13:48893600-48895200 Weak transcription Left Ventricle heart
50 chr13:48893600-48895200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015