Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:41425304..41429090-chr21:41430409..41436331,6	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10470192	0.83[AMR][1000 genomes]
rs12627033	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12627061	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882780	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2142121	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2837383	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2837384	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2837405	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837410	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837413	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2837417	0.80[EUR][1000 genomes]
rs2837419	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2837421	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2837422	0.83[AMR][1000 genomes]
rs2837423	0.84[EUR][1000 genomes]
rs28582765	0.81[EUR][1000 genomes]
rs2860103	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4818115	0.80[EUR][1000 genomes]
rs9974743	0.80[EUR][1000 genomes]
rs9975265	0.80[EUR][1000 genomes]
rs9976662	0.85[ASN][1000 genomes]
rs9978703	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9979120	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41420800-41435600	Weak transcription	Aorta	Aorta
2	chr21:41421800-41435400	Weak transcription	Right Atrium	heart
3	chr21:41426800-41437000	Weak transcription	Pancreas	Pancrea
4	chr21:41426800-41437800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr21:41426800-41445800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:41427600-41442400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr21:41428600-41431000	Enhancers	Fetal Brain Male	brain
8	chr21:41429400-41430600	Weak transcription	Brain Germinal Matrix	brain
9	chr21:41429800-41431800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr21:41430200-41431200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr21:41430400-41431600	Weak transcription	Fetal Brain Female	brain

Quick Search: