Variant report

Variant	rs2837423
Chromosome Location	chr21:41444850-41444851
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10470193	0.84[EUR][1000 genomes]
rs12627033	0.88[EUR][1000 genomes]
rs12627061	0.89[EUR][1000 genomes]
rs1882780	0.89[EUR][1000 genomes]
rs2837410	0.89[EUR][1000 genomes]
rs2837413	0.82[EUR][1000 genomes]
rs2837417	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2837418	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2837419	0.88[EUR][1000 genomes]
rs2837421	0.96[EUR][1000 genomes]
rs2837422	0.88[EUR][1000 genomes]
rs4818115	0.88[EUR][1000 genomes]
rs4818116	0.84[EUR][1000 genomes]
rs9974743	0.88[EUR][1000 genomes]
rs9975265	0.88[EUR][1000 genomes]
rs9978703	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41426800-41445800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:41433000-41446200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr21:41438000-41446400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr21:41438000-41453000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr21:41440000-41445800	Weak transcription	Colon Smooth Muscle	Colon
6	chr21:41440000-41455400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr21:41440400-41449800	Weak transcription	Fetal Brain Female	brain
8	chr21:41442800-41446800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr21:41443000-41452000	Weak transcription	Fetal Muscle Leg	muscle
10	chr21:41443000-41460000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr21:41444000-41460400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr21:41444800-41448200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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