Variant report

Variant	rs1882780
Chromosome Location	chr21:41435470-41435471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:41435302..41437645-chr21:41444295..41446536,2	MCF-7	breast:
2	chr21:41425304..41429090-chr21:41430409..41436331,6	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C21orf88-2	chr21:41435297-41437212	NONHSAT082215
2	lnc-C21orf88-2	chr21:41435297-41437212	l_2217_NR_024100

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10470193	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12627033	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12627061	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2142121	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2837383	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2837384	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2837405	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837410	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2837413	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2837417	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2837418	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2837419	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2837421	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2837422	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2837423	0.89[EUR][1000 genomes]
rs2860103	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4818115	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4818116	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9974743	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9975265	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9978703	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9979120	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv913745	chr21:41423346-41473566	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:41420800-41435600	Weak transcription	Aorta	Aorta
2	chr21:41426800-41437000	Weak transcription	Pancreas	Pancrea
3	chr21:41426800-41437800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr21:41426800-41445800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr21:41427600-41442400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr21:41432600-41439600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr21:41433000-41438400	Weak transcription	Fetal Brain Female	brain
8	chr21:41433000-41446200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr21:41434400-41435800	Weak transcription	Fetal Brain Male	brain

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