Variant report

Variant	rs10470904
Chromosome Location	chr4:78422822-78422823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11930677	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17002700	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2083701	0.86[CHB][hapmap]
rs2083702	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2903242	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4859499	0.82[ASN][1000 genomes]
rs6826277	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72650458	0.83[ASN][1000 genomes]
rs7676991	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78415400-78424400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:78421800-78423600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:78421800-78423600	Enhancers	HSMMtube	muscle
4	chr4:78421800-78424000	Enhancers	HSMM	muscle
5	chr4:78422000-78423200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:78422200-78423200	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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