Variant report

Variant	rs6826277
Chromosome Location	chr4:78420654-78420655
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78415252..78417531-chr4:78420466..78422240,2	K562	blood:

Variant related genes	Relation type
ENSG00000249036	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10470904	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11930677	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17002681	0.81[EUR][1000 genomes]
rs17002682	0.83[EUR][1000 genomes]
rs17002687	0.82[EUR][1000 genomes]
rs17002700	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1867107	0.83[EUR][1000 genomes]
rs1992489	0.85[EUR][1000 genomes]
rs2083701	0.80[CEU][hapmap]
rs2083702	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2866292	0.82[EUR][1000 genomes]
rs2903241	0.82[AMR][1000 genomes]
rs2903242	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4152	0.82[EUR][1000 genomes]
rs4859499	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4859842	0.82[EUR][1000 genomes]
rs4859843	0.82[EUR][1000 genomes]
rs4859844	0.82[EUR][1000 genomes]
rs4859845	0.82[EUR][1000 genomes]
rs4859846	0.82[EUR][1000 genomes]
rs55685718	0.82[EUR][1000 genomes]
rs55729445	0.83[EUR][1000 genomes]
rs55915318	0.82[EUR][1000 genomes]
rs56092580	0.82[EUR][1000 genomes]
rs56164638	0.81[EUR][1000 genomes]
rs62302436	0.82[EUR][1000 genomes]
rs62302437	0.82[EUR][1000 genomes]
rs62302438	0.82[EUR][1000 genomes]
rs62302439	0.82[EUR][1000 genomes]
rs62302442	0.84[EUR][1000 genomes]
rs62302445	0.87[EUR][1000 genomes]
rs72650458	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7670432	0.83[EUR][1000 genomes]
rs7676991	0.85[CEU][hapmap];0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7681293	0.82[EUR][1000 genomes]
rs7699486	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6826277	SEPT11	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78415400-78424400	Weak transcription	Primary hematopoietic stem cells	blood

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