Variant report

Variant	rs1867107
Chromosome Location	chr4:78368868-78368869
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10008817	0.88[CEU][hapmap]
rs10017843	0.88[CEU][hapmap]
rs11930677	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11931577	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs11934887	0.86[CHB][hapmap];0.92[CHD][hapmap]
rs11936072	0.87[CEU][hapmap]
rs11936117	0.88[CEU][hapmap];0.92[CHB][hapmap];0.89[ASN][1000 genomes]
rs11939449	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11942781	0.88[CEU][hapmap];0.92[CHB][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11945282	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11946102	0.88[CEU][hapmap]
rs17002675	0.88[CEU][hapmap];0.92[CHB][hapmap];0.80[ASN][1000 genomes]
rs17002676	0.88[CEU][hapmap]
rs17002681	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002682	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17002687	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002700	0.88[CEU][hapmap];0.85[JPT][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1992489	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2083701	0.93[CEU][hapmap];0.82[CHB][hapmap]
rs2083702	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2119977	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2866292	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2903241	0.81[EUR][1000 genomes]
rs2903242	0.81[EUR][1000 genomes]
rs4152	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4859499	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4859839	0.88[CEU][hapmap]
rs4859840	0.88[CEU][hapmap]
rs4859842	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4859843	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4859844	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4859845	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4859846	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55685718	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55729445	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55915318	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56092580	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56107646	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56164638	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302436	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302437	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302438	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302439	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302442	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62302445	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6826277	0.88[CEU][hapmap];0.85[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs72650428	0.87[ASN][1000 genomes]
rs72650458	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7670432	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7676991	0.83[EUR][1000 genomes]
rs7681293	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7699486	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1867107	SEPT11	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78357400-78373800	Weak transcription	Spleen	Spleen
2	chr4:78365800-78370600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:78367600-78369000	Enhancers	Aorta	Aorta
4	chr4:78367800-78369800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:78367800-78370600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:78367800-78374800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:78368200-78370400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:78368200-78370600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:78368600-78370600	Weak transcription	Fetal Lung	lung

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