Variant report

Variant	rs17002675
Chromosome Location	chr4:78344229-78344230
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78338803..78341194-chr4:78343651..78346166,2	MCF-7	breast:
2	chr4:78338629..78341861-chr4:78342907..78345860,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10008817	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10017843	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1031081	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11931577	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11934190	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11934887	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11936072	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11936117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11942781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11946102	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17002676	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17002681	0.80[ASN][1000 genomes]
rs17002682	0.82[ASN][1000 genomes]
rs17002687	0.80[ASN][1000 genomes]
rs1867107	0.80[ASN][1000 genomes]
rs1992489	0.80[ASN][1000 genomes]
rs2083701	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap]
rs2119977	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866292	0.80[ASN][1000 genomes]
rs35848195	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4152	0.80[ASN][1000 genomes]
rs4859839	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4859840	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4859842	0.80[ASN][1000 genomes]
rs4859843	0.80[ASN][1000 genomes]
rs4859844	0.81[ASN][1000 genomes]
rs4859845	0.81[ASN][1000 genomes]
rs4859846	0.81[ASN][1000 genomes]
rs55729445	0.82[ASN][1000 genomes]
rs55915318	0.80[ASN][1000 genomes]
rs56092580	0.80[ASN][1000 genomes]
rs60688594	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62302403	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62302404	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62302406	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62302436	0.81[ASN][1000 genomes]
rs62302437	0.81[ASN][1000 genomes]
rs62302438	0.81[ASN][1000 genomes]
rs62302439	0.81[ASN][1000 genomes]
rs62302442	0.81[ASN][1000 genomes]
rs72650428	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7670432	0.82[ASN][1000 genomes]
rs7681293	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78343600-78353600	Weak transcription	Aorta	Aorta

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