Variant report

Variant	rs72650428
Chromosome Location	chr4:78347527-78347528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10008817	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10017843	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1031081	0.86[ASN][1000 genomes]
rs11931577	0.86[ASN][1000 genomes]
rs11934190	0.86[ASN][1000 genomes]
rs11934887	0.86[ASN][1000 genomes]
rs11936072	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11936117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11942781	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11946102	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17002675	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17002676	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17002681	0.87[ASN][1000 genomes]
rs17002682	0.87[ASN][1000 genomes]
rs17002687	0.87[ASN][1000 genomes]
rs1867107	0.87[ASN][1000 genomes]
rs1992489	0.84[ASN][1000 genomes]
rs2119977	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2866292	0.87[ASN][1000 genomes]
rs35848195	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4152	0.87[ASN][1000 genomes]
rs4859839	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859840	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4859842	0.84[ASN][1000 genomes]
rs4859843	0.84[ASN][1000 genomes]
rs4859844	0.86[ASN][1000 genomes]
rs4859845	0.86[ASN][1000 genomes]
rs4859846	0.86[ASN][1000 genomes]
rs55685718	0.86[ASN][1000 genomes]
rs55729445	0.87[ASN][1000 genomes]
rs55915318	0.84[ASN][1000 genomes]
rs56092580	0.87[ASN][1000 genomes]
rs56164638	0.86[ASN][1000 genomes]
rs60688594	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62302403	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62302404	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62302406	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62302436	0.86[ASN][1000 genomes]
rs62302437	0.86[ASN][1000 genomes]
rs62302438	0.86[ASN][1000 genomes]
rs62302439	0.86[ASN][1000 genomes]
rs62302442	0.86[ASN][1000 genomes]
rs62302445	0.86[ASN][1000 genomes]
rs7670432	0.87[ASN][1000 genomes]
rs7681293	0.86[ASN][1000 genomes]
rs7699486	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467913	chr4:78347461-78347570	Weak transcription	n/a	n/a	inside rSNPs	diseases
3	esv3467914	chr4:78347475-78347571	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78343600-78353600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links