Variant report

Variant	rs2119977
Chromosome Location	chr4:78353488-78353489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78287359..78291622-chr4:78351702..78357008,5	MCF-7	breast:
2	chr4:78306279..78307489-chr4:78353325..78355121,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNG2-1	chr4:78353394-78353534	NONHSAT097050

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10008817	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10017843	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1031081	0.82[ASN][1000 genomes]
rs11931577	0.82[ASN][1000 genomes]
rs11934190	0.82[ASN][1000 genomes]
rs11934887	0.82[ASN][1000 genomes]
rs11936072	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11936117	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11942781	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11946102	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17002675	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17002676	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17002681	0.95[ASN][1000 genomes]
rs17002682	0.95[ASN][1000 genomes]
rs17002687	0.95[ASN][1000 genomes]
rs1867107	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1992489	0.93[ASN][1000 genomes]
rs2083702	0.87[ASN][1000 genomes]
rs2866292	0.95[ASN][1000 genomes]
rs35848195	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4152	0.95[ASN][1000 genomes]
rs4859499	0.87[ASN][1000 genomes]
rs4859839	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4859840	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4859842	0.93[ASN][1000 genomes]
rs4859843	0.93[ASN][1000 genomes]
rs4859844	0.94[ASN][1000 genomes]
rs4859845	0.94[ASN][1000 genomes]
rs4859846	0.94[ASN][1000 genomes]
rs55685718	0.94[ASN][1000 genomes]
rs55729445	0.95[ASN][1000 genomes]
rs55915318	0.93[ASN][1000 genomes]
rs56092580	0.95[ASN][1000 genomes]
rs56107646	0.88[ASN][1000 genomes]
rs56164638	0.94[ASN][1000 genomes]
rs60688594	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62302403	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62302404	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62302406	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62302436	0.94[ASN][1000 genomes]
rs62302437	0.94[ASN][1000 genomes]
rs62302438	0.94[ASN][1000 genomes]
rs62302439	0.94[ASN][1000 genomes]
rs62302442	0.94[ASN][1000 genomes]
rs62302445	0.94[ASN][1000 genomes]
rs72650428	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72650458	0.84[ASN][1000 genomes]
rs7670432	0.95[ASN][1000 genomes]
rs7681293	0.94[ASN][1000 genomes]
rs7699486	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78343600-78353600	Weak transcription	Aorta	Aorta
2	chr4:78352200-78354600	Enhancers	Psoas Muscle	Psoas
3	chr4:78352200-78354600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr4:78352200-78354800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr4:78352200-78356200	Enhancers	Fetal Muscle Leg	muscle
6	chr4:78352400-78356400	Enhancers	HSMMtube	muscle
7	chr4:78353400-78353600	Enhancers	Spleen	Spleen

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