Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10008817	0.80[CHB][hapmap]
rs10017843	0.82[CEU][hapmap]
rs10470904	0.81[JPT][hapmap]
rs11931577	0.86[CHB][hapmap]
rs11934887	0.86[CHB][hapmap]
rs11936072	0.80[CHB][hapmap]
rs11936117	0.93[CHB][hapmap]
rs11942781	0.93[CHB][hapmap]
rs11946102	0.80[CHB][hapmap]
rs17002675	0.93[CHB][hapmap]
rs17002676	0.82[CEU][hapmap]
rs17002682	0.81[EUR][1000 genomes]
rs17002700	0.94[CEU][hapmap];0.83[JPT][hapmap]
rs1867107	0.81[EUR][1000 genomes]
rs1992489	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2083701	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs2083702	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2903242	0.85[AMR][1000 genomes]
rs4859840	0.80[CHB][hapmap]
rs55729445	0.81[EUR][1000 genomes]
rs62302442	0.82[EUR][1000 genomes]
rs62302445	0.85[EUR][1000 genomes]
rs6826277	0.94[CEU][hapmap];0.83[JPT][hapmap];0.82[AMR][1000 genomes]
rs72650458	0.87[EUR][1000 genomes]
rs7670432	0.81[EUR][1000 genomes]
rs7676991	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs7699486	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78398600-78402400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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