Variant report

Variant	rs10470954
Chromosome Location	chr4:99586508-99586509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99585321..99586904-chr4:99594155..99595902,2	K562	blood:
2	chr4:99586005..99588418-chr4:99588988..99590889,2	MCF-7	breast:
3	chr4:99586072..99588505-chr4:99596405..99598521,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10034690	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528008	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120376	1.00[CHB][hapmap]
rs4699664	1.00[JPT][hapmap]
rs62325462	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6819703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6822967	1.00[CHB][hapmap]
rs894810	1.00[CHB][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99583800-99586800	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:99584400-99590000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:99585200-99586600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:99585200-99586600	Weak transcription	Fetal Stomach	stomach
5	chr4:99585200-99586800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:99585200-99587200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr4:99585200-99593800	Weak transcription	Stomach Mucosa	stomach
8	chr4:99585200-99594200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:99585400-99586600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:99585400-99587400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr4:99585600-99586600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr4:99585600-99586800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:99585600-99586800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr4:99585600-99587200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr4:99585600-99587400	ZNF genes & repeats	Dnd41	blood
16	chr4:99585800-99586600	ZNF genes & repeats	Thymus	Thymus
17	chr4:99585800-99586800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:99585800-99587200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:99585800-99587200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chr4:99586000-99586800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:99586200-99586600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:99586200-99587400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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