Variant report

Variant	rs6819703
Chromosome Location	chr4:99595604-99595605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10034690	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10470954	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1528008	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2120376	1.00[CHB][hapmap]
rs62325462	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6822967	1.00[CHB][hapmap]
rs894810	1.00[CHB][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6819703	ADH5	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99587200-99598800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:99594400-99595800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:99594600-99601000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:99594600-99606200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:99594800-99601000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:99595200-99596000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:99595600-99596000	Enhancers	Liver	Liver
8	chr4:99595600-99596000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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