Variant report

Variant	rs10477012
Chromosome Location	chr5:151667987-151667988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10052614	0.83[AFR][1000 genomes]
rs10064150	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064173	0.84[AFR][1000 genomes]
rs10074742	0.83[AFR][1000 genomes]
rs10477013	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10515659	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355430	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13436558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113107	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113109	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113242	1.00[AMR][1000 genomes]
rs1862290	1.00[AMR][1000 genomes]
rs2098637	1.00[AMR][1000 genomes]
rs28751907	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151667000-151669000	Enhancers	Left Ventricle	heart
2	chr5:151667000-151669400	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:151667200-151668600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr5:151667200-151669200	Enhancers	Right Atrium	heart
5	chr5:151667200-151669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr5:151667400-151668600	Enhancers	Colon Smooth Muscle	Colon
7	chr5:151667800-151669400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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