Variant report

Variant	rs17113109
Chromosome Location	chr5:151715942-151715943
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10064150	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477012	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10477013	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10515659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355430	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358261	1.00[AMR][1000 genomes]
rs13436558	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113052	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1862290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2098637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151714600-151716000	Enhancers	Brain Cingulate Gyrus	brain
2	chr5:151714600-151716000	Enhancers	Brain Hippocampus Middle	brain
3	chr5:151714800-151716600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:151715400-151716000	Enhancers	Brain Anterior Caudate	brain
5	chr5:151715600-151716000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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