Variant report

Variant	rs10477013
Chromosome Location	chr5:151669253-151669254
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10057903	1.00[YRI][hapmap]
rs10064150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10064173	0.90[AFR][1000 genomes]
rs10477012	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10515659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13355430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13358261	1.00[AMR][1000 genomes]
rs13361661	1.00[YRI][hapmap]
rs13436558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113107	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113109	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113242	1.00[AMR][1000 genomes]
rs1862290	1.00[AMR][1000 genomes]
rs2098637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151667000-151669400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr5:151667200-151669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:151667800-151669400	Enhancers	Adipose Nuclei	Adipose
4	chr5:151668000-151669400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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